Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   SR36_RS12755 Genome accession   NZ_CP010816
Coordinates   2571826..2572563 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain BL21 (TaKaRa)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2566826..2577563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR36_RS12740 (SR36_12740) clpC 2567280..2569853 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  SR36_RS12745 (SR36_12745) yfiH 2569983..2570714 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  SR36_RS12750 (SR36_12750) rluD 2570711..2571691 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SR36_RS12755 (SR36_12755) comL 2571826..2572563 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  SR36_RS12765 (SR36_12765) raiA 2572834..2573175 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  SR36_RS25090 pheL 2573279..2573326 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  SR36_RS12770 (SR36_12770) pheA 2573424..2574584 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  SR36_RS12775 (SR36_12775) tyrA 2574627..2575748 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  SR36_RS12780 (SR36_12780) aroF 2575759..2576829 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  SR36_RS12785 (SR36_12785) yfiL 2577039..2577404 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=124598 SR36_RS12755 WP_000197686.1 2571826..2572563(+) (comL) [Escherichia coli strain BL21 (TaKaRa)]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=124598 SR36_RS12755 WP_000197686.1 2571826..2572563(+) (comL) [Escherichia coli strain BL21 (TaKaRa)]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment