Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VAB027_RS15770 Genome accession   NZ_CP010812
Coordinates   3409876..3410601 (+) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain 10432-62     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404876..3415601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS15755 (VAB027_3124) clpC 3405324..3407897 (-) 2574 WP_046127079.1 ATP-dependent chaperone ClpB Regulator
  VAB027_RS15760 (VAB027_3125) pgeF 3408022..3408744 (-) 723 WP_000602840.1 peptidoglycan editing factor PgeF -
  VAB027_RS15765 (VAB027_3126) rluD 3408747..3409721 (-) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VAB027_RS15770 (VAB027_3127) comL 3409876..3410601 (+) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  VAB027_RS15775 (VAB027_3128) hpf 3411003..3411329 (+) 327 WP_046127080.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VAB027_RS15780 (VAB027_3129) pheA 3411569..3412744 (+) 1176 WP_000130286.1 prephenate dehydratase -
  VAB027_RS15785 (VAB027_3130) - 3412926..3413966 (+) 1041 WP_000595744.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=124540 VAB027_RS15770 WP_000877198.1 3409876..3410601(+) (comL) [Vibrio cholerae strain 10432-62]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=124540 VAB027_RS15770 WP_000877198.1 3409876..3410601(+) (comL) [Vibrio cholerae strain 10432-62]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378

Multiple sequence alignment