Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VAB027_RS07615 Genome accession   NZ_CP010812
Coordinates   1614474..1616138 (-) Length   554 a.a.
NCBI ID   WP_046126494.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609474..1621138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS07585 - 1610088..1610531 (+) 444 Protein_1468 IS3 family transposase -
  VAB027_RS07590 (VAB027_1489) - 1610621..1611868 (-) 1248 WP_046126493.1 integrase domain-containing protein -
  VAB027_RS07595 (VAB027_1490) smpB 1612469..1612954 (-) 486 WP_000162689.1 SsrA-binding protein SmpB -
  VAB027_RS07600 (VAB027_1491) - 1613138..1613572 (+) 435 WP_000815880.1 SRPBCC family protein -
  VAB027_RS07605 (VAB027_1492) - 1613575..1613880 (+) 306 WP_001918351.1 RnfH family protein -
  VAB027_RS07610 (VAB027_1493) bamE 1613956..1614315 (-) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  VAB027_RS07615 (VAB027_1494) recN 1614474..1616138 (-) 1665 WP_046126494.1 DNA repair protein RecN Machinery gene
  VAB027_RS07620 (VAB027_1495) nadK 1616268..1617152 (-) 885 WP_000742830.1 NAD(+) kinase -
  VAB027_RS07625 (VAB027_1496) grpE 1617298..1617900 (+) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  VAB027_RS20355 - 1617893..1618006 (-) 114 WP_001924835.1 hypothetical protein -
  VAB027_RS07630 (VAB027_1497) dnaK 1618164..1620071 (+) 1908 WP_000516147.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61291.95 Da        Isoelectric Point: 5.5683

>NTDB_id=124502 VAB027_RS07615 WP_046126494.1 1614474..1616138(-) (recN) [Vibrio cholerae strain 10432-62]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDELYQTFVSAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=124502 VAB027_RS07615 WP_046126494.1 1614474..1616138(-) (recN) [Vibrio cholerae strain 10432-62]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCAGCCTTTCATCTGGATAACAATCTGCTCGCCAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTAGCTCTCGGTGAGGATGAGTTTGTCGAACTAGAACAAGAGC
ATAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGAGCTCTACCAAACCTTTGTTTCGGCTGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCTTCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCAACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAGGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTGGTCGGTAAACTGTTACGTAAGTTG
GGCGAGTCAACCCAAGTACTGTGTGTTACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAGGAACAGCGCATTGCTGAACTGGCGCGCTTGC
TCGGAGGGAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365

Multiple sequence alignment