Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   GT95_RS09845 Genome accession   NZ_CP008813
Coordinates   1898071..1899330 (-) Length   419 a.a.
NCBI ID   WP_000900645.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   processing of ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1890888..1912222 1898071..1899330 within 0


Gene organization within MGE regions


Location: 1890888..1912222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS09830 (GT95_09525) - 1890888..1895294 (-) 4407 WP_001292134.1 PolC-type DNA polymerase III -
  GT95_RS09835 (GT95_09530) - 1895417..1896001 (-) 585 WP_000842268.1 glycoside hydrolase family 73 protein -
  GT95_RS09840 (GT95_09535) - 1896126..1897979 (-) 1854 WP_000814042.1 proline--tRNA ligase -
  GT95_RS09845 (GT95_09540) eeP 1898071..1899330 (-) 1260 WP_000900645.1 RIP metalloprotease RseP Regulator
  GT95_RS09850 (GT95_09545) - 1899361..1900155 (-) 795 WP_000664686.1 phosphatidate cytidylyltransferase -
  GT95_RS09855 (GT95_09550) - 1900170..1900922 (-) 753 WP_000469560.1 isoprenyl transferase -
  GT95_RS09860 (GT95_09555) yajC 1901089..1901430 (-) 342 WP_000056607.1 preprotein translocase subunit YajC -
  GT95_RS09865 (GT95_09560) - 1901507..1901851 (-) 345 WP_000286792.1 thioredoxin domain-containing protein -
  GT95_RS09870 (GT95_09565) galE 1902037..1903032 (-) 996 WP_000279629.1 UDP-glucose 4-epimerase GalE -
  GT95_RS09875 (GT95_09570) - 1903120..1904727 (-) 1608 WP_069107346.1 alpha-glucosidase -
  GT95_RS09880 (GT95_09575) ugpC 1904856..1905989 (-) 1134 WP_000229966.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  GT95_RS09885 (GT95_09580) - 1906090..1906941 (-) 852 WP_000345946.1 helix-turn-helix domain-containing protein -
  GT95_RS09890 (GT95_09585) - 1907036..1907932 (-) 897 WP_001018630.1 aldose 1-epimerase family protein -
  GT95_RS09895 (GT95_09590) lacD 1907986..1908965 (-) 980 Protein_1848 tagatose-bisphosphate aldolase -
  GT95_RS09900 - 1909144..1910646 (-) 1503 Protein_1849 tyrosine-type recombinase/integrase -
  GT95_RS09905 (GT95_09610) - 1910717..1911861 (+) 1145 WP_088881664.1 IS3 family transposase -
  GT95_RS09910 (GT95_09615) - 1911989..1912222 (-) 234 WP_000693749.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46001.01 Da        Isoelectric Point: 10.0324

>NTDB_id=124440 GT95_RS09845 WP_000900645.1 1898071..1899330(-) (eeP) [Streptococcus agalactiae strain C001]
MLGILTFIIIFGIIVVVHEFGHFYFAKKSGILVREFAIGMGPKIFSHIDKEGTTYTIRILPLGGYVRMAGWGDDKTEIKT
GTPASLTLNKEGIVTRINLSGKQLDNTSLPINVTAYDLEGKLTITGLVLSETKTYSVDHDATIIEEDGTEIRIAPLDVQY
QNASVWGRLITNFAGPMNNFILGLVVFIALAFVQGGVQDLSTNQVRVSENGPAASAGLKNNDRILQIGSHKVSNWEQLTA
AVEKSTSHLEKNQKLALKIKSKEVVKTINVKPQKVDKSYIIGIMPVLKTSFKDKLLGGFKLAWESFFRILNELKKLIAHF
SINKLGGPVALYQASSQAAKNGFVTVLNLMGLISINLGIMNLIPIPALDGGKIVMNILEAIRRKPLKQETETYITLAGVA
VMLVLMIAVTWNDIMRAFF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=124440 GT95_RS09845 WP_000900645.1 1898071..1899330(-) (eeP) [Streptococcus agalactiae strain C001]
ATGCTAGGAATTTTAACCTTTATTATTATTTTTGGTATCATTGTAGTTGTTCACGAATTTGGGCATTTCTATTTTGCAAA
GAAATCAGGAATTCTTGTTCGTGAATTTGCTATTGGTATGGGTCCAAAAATCTTTTCTCACATTGATAAAGAAGGAACAA
CCTATACTATTCGTATATTACCGCTAGGTGGTTATGTCCGTATGGCTGGTTGGGGTGATGATAAGACTGAAATTAAGACA
GGGACGCCGGCTAGCCTTACTTTAAATAAAGAAGGCATTGTAACTCGTATTAATTTATCAGGAAAACAATTAGACAATAC
TTCTTTACCAATCAATGTAACAGCTTATGATTTAGAAGGTAAACTAACTATCACAGGATTGGTCTTAAGTGAGACAAAAA
CCTATAGTGTTGATCACGATGCTACTATCATTGAGGAGGATGGTACTGAAATTCGTATTGCTCCCTTAGATGTGCAGTAT
CAGAATGCTTCTGTATGGGGGCGCTTAATTACCAATTTTGCAGGTCCGATGAATAATTTTATTTTAGGTCTTGTAGTCTT
TATTGCACTTGCTTTTGTTCAAGGAGGTGTTCAAGATTTATCAACCAATCAGGTCCGTGTATCAGAAAATGGTCCTGCTG
CTAGTGCAGGTTTAAAAAATAATGACCGTATTTTACAAATAGGGTCGCACAAAGTTTCTAACTGGGAACAGTTGACAGCA
GCAGTAGAAAAGTCAACTAGTCATTTAGAAAAAAACCAAAAACTTGCCCTTAAAATTAAGAGCAAAGAGGTGGTGAAAAC
GATCAACGTTAAGCCACAGAAAGTTGATAAATCCTACATCATCGGTATTATGCCAGTTCTAAAGACAAGCTTTAAAGACA
AGCTTTTAGGTGGATTTAAACTAGCATGGGAAAGTTTCTTTAGAATTTTAAATGAATTAAAGAAACTTATTGCTCATTTT
AGTATTAATAAATTGGGAGGTCCAGTAGCTCTCTATCAGGCTAGTAGCCAAGCTGCTAAAAATGGTTTCGTCACAGTTCT
CAACTTAATGGGATTAATCTCTATCAACTTAGGTATTATGAATCTCATCCCTATACCAGCCCTTGACGGGGGTAAGATAG
TGATGAATATTTTAGAAGCCATTCGTCGCAAACCACTTAAACAAGAAACAGAAACTTATATTACGCTCGCTGGGGTAGCA
GTTATGTTAGTATTAATGATTGCTGTAACCTGGAACGATATCATGCGAGCTTTCTTCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-405)

PDZ domain (PDZ_2)

(205-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

69.524

100

0.697
  eeP Streptococcus thermophilus LMD-9

69.286

100

0.695

Multiple sequence alignment