Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VAA049_RS14695 Genome accession   NZ_CP010811
Coordinates   3191763..3193427 (+) Length   554 a.a.
NCBI ID   WP_000879550.1    Uniprot ID   A0AAU8WIH4
Organism   Vibrio cholerae strain 1154-74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3186763..3198427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS14680 (VAA049_2881) dnaK 3187830..3189737 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  VAA049_RS19435 - 3189895..3190008 (+) 114 WP_001924835.1 hypothetical protein -
  VAA049_RS14685 (VAA049_2882) grpE 3190001..3190603 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  VAA049_RS14690 (VAA049_2883) nadK 3190749..3191633 (+) 885 WP_000742830.1 NAD(+) kinase -
  VAA049_RS14695 (VAA049_2884) recN 3191763..3193427 (+) 1665 WP_000879550.1 DNA repair protein RecN Machinery gene
  VAA049_RS14700 (VAA049_2885) bamE 3193586..3193945 (+) 360 WP_001160907.1 outer membrane protein assembly factor BamE -
  VAA049_RS14705 (VAA049_2886) - 3194021..3194326 (-) 306 WP_001918351.1 RnfH family protein -
  VAA049_RS14710 (VAA049_2887) - 3194329..3194763 (-) 435 WP_000815880.1 SRPBCC family protein -
  VAA049_RS14715 (VAA049_2888) smpB 3194947..3195432 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61245.97 Da        Isoelectric Point: 5.6762

>NTDB_id=124437 VAA049_RS14695 WP_000879550.1 3191763..3193427(+) (recN) [Vibrio cholerae strain 1154-74]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=124437 VAA049_RS14695 WP_000879550.1 3191763..3193427(+) (recN) [Vibrio cholerae strain 1154-74]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGCGAAACCGGTGCCGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTTTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAGTT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
ACAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTTTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAACTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGCGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAGGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTGGTCGGTAAACTGTTACGTAAGTTG
GGCGAGTCAACTCAAGTACTGTGTGTTACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAGGAACAGCGCATTGCTGAACTGGCGCGCTTGC
TCGGAGGGAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAU8WIH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365