Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   TH69_RS12960 Genome accession   NZ_CP010585
Coordinates   2602661..2603398 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C41(DE3)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597661..2608398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TH69_RS12945 (TH69_12945) clpC 2598115..2600688 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  TH69_RS12950 (TH69_12950) yfiH 2600818..2601549 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  TH69_RS12955 (TH69_12955) rluD 2601546..2602526 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  TH69_RS12960 (TH69_12960) comL 2602661..2603398 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  TH69_RS12970 (TH69_12970) raiA 2603669..2604010 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  TH69_RS25305 pheL 2604114..2604161 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  TH69_RS12975 (TH69_12975) pheA 2604259..2605419 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  TH69_RS12980 (TH69_12980) tyrA 2605462..2606583 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  TH69_RS12985 (TH69_12985) aroF 2606594..2607664 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  TH69_RS12990 (TH69_12990) yfiL 2607874..2608239 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=124172 TH69_RS12960 WP_000197686.1 2602661..2603398(+) (comL) [Escherichia coli strain C41(DE3)]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=124172 TH69_RS12960 WP_000197686.1 2602661..2603398(+) (comL) [Escherichia coli strain C41(DE3)]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376