Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SHYC_RS07935 Genome accession   NZ_CP008747
Coordinates   1674590..1675471 (-) Length   293 a.a.
NCBI ID   WP_039646067.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain ATCC 11249     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1669590..1680471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHYC_RS07920 (SHYC_08140) xerC 1670097..1670987 (-) 891 WP_039646062.1 tyrosine recombinase XerC -
  SHYC_RS07925 (SHYC_08145) trmFO 1671109..1672413 (-) 1305 WP_039646064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  SHYC_RS07930 (SHYC_08150) topA 1672426..1674495 (-) 2070 WP_039646065.1 type I DNA topoisomerase -
  SHYC_RS07935 (SHYC_08155) dprA 1674590..1675471 (-) 882 WP_039646067.1 DNA-processing protein DprA Machinery gene
  SHYC_RS07940 (SHYC_08160) sucD 1676013..1676921 (-) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  SHYC_RS07945 (SHYC_08165) sucC 1676943..1678109 (-) 1167 WP_039646072.1 ADP-forming succinate--CoA ligase subunit beta -
  SHYC_RS07950 (SHYC_08175) - 1678323..1678592 (-) 270 WP_039646074.1 hypothetical protein -
  SHYC_RS07955 (SHYC_08180) - 1678679..1679464 (-) 786 WP_039646076.1 ribonuclease HII -
  SHYC_RS07960 (SHYC_08185) ylqF 1679445..1680326 (-) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33365.78 Da        Isoelectric Point: 9.8589

>NTDB_id=124039 SHYC_RS07935 WP_039646067.1 1674590..1675471(-) (dprA) [Staphylococcus hyicus strain ATCC 11249]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILYQLWQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDFTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRLISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=124039 SHYC_RS07935 WP_039646067.1 1674590..1675471(-) (dprA) [Staphylococcus hyicus strain ATCC 11249]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGATATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATATCAGCTATGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTTTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGCTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTTTAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

49.825

97.27

0.485
  dprA Staphylococcus aureus MW2

49.474

97.27

0.481

Multiple sequence alignment