Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | SHYC_RS06655 | Genome accession | NZ_CP008747 |
| Coordinates | 1394102..1395076 (+) | Length | 324 a.a. |
| NCBI ID | WP_039645580.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain ATCC 11249 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1389102..1400076
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SHYC_RS06620 (SHYC_06825) | rpmG | 1389634..1389798 (+) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
| SHYC_RS06625 (SHYC_06830) | - | 1389911..1390450 (+) | 540 | WP_039645567.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| SHYC_RS06630 (SHYC_06835) | - | 1390468..1391907 (+) | 1440 | WP_039645569.1 | rhomboid family intramembrane serine protease | - |
| SHYC_RS06635 (SHYC_06840) | - | 1391909..1392112 (+) | 204 | WP_039645571.1 | YqgQ family protein | - |
| SHYC_RS06640 (SHYC_06845) | - | 1392109..1393095 (+) | 987 | WP_039645573.1 | ROK family glucokinase | - |
| SHYC_RS06645 (SHYC_06850) | - | 1393097..1393408 (+) | 312 | WP_039645576.1 | MTH1187 family thiamine-binding protein | - |
| SHYC_RS06650 (SHYC_06855) | - | 1393423..1394046 (+) | 624 | WP_039645578.1 | MBL fold metallo-hydrolase | - |
| SHYC_RS06655 (SHYC_06860) | comGA | 1394102..1395076 (+) | 975 | WP_039645580.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SHYC_RS06660 (SHYC_06865) | comGB | 1395045..1396112 (+) | 1068 | WP_039645581.1 | competence type IV pilus assembly protein ComGB | - |
| SHYC_RS06665 (SHYC_06870) | comGC | 1396124..1396444 (+) | 321 | WP_039645583.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SHYC_RS06670 (SHYC_06875) | comGD | 1396434..1396865 (+) | 432 | WP_231912771.1 | competence type IV pilus minor pilin ComGD | - |
| SHYC_RS06675 (SHYC_06880) | - | 1397058..1397540 (+) | 483 | WP_039645587.1 | competence type IV pilus minor pilin ComGF | - |
| SHYC_RS06680 (SHYC_06888) | - | 1397524..1397721 (+) | 198 | WP_039645590.1 | hypothetical protein | - |
| SHYC_RS06685 (SHYC_06890) | - | 1397699..1398229 (+) | 531 | WP_039645592.1 | shikimate kinase | - |
| SHYC_RS06690 (SHYC_06895) | gcvT | 1398384..1399475 (+) | 1092 | WP_039645594.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36960.81 Da Isoelectric Point: 7.2049
>NTDB_id=124033 SHYC_RS06655 WP_039645580.1 1394102..1395076(+) (comGA) [Staphylococcus hyicus strain ATCC 11249]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGSSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=124033 SHYC_RS06655 WP_039645580.1 1394102..1395076(+) (comGA) [Staphylococcus hyicus strain ATCC 11249]
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAGTTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAGTTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
57.585 |
99.691 |
0.574 |
| comGA | Staphylococcus aureus N315 |
57.585 |
99.691 |
0.574 |