Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SHYC_RS00895 Genome accession   NZ_CP008747
Coordinates   214257..214922 (+) Length   221 a.a.
NCBI ID   WP_039643662.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain ATCC 11249     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 209257..219922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHYC_RS00875 (SHYC_00890) - 210943..211755 (+) 813 WP_039643660.1 hypothetical protein -
  SHYC_RS11790 (SHYC_00895) - 211852..212490 (+) 639 WP_052257767.1 DUF4064 domain-containing protein -
  SHYC_RS00885 (SHYC_00900) - 212617..213102 (+) 486 WP_052257768.1 sensor histidine kinase KdpD -
  SHYC_RS00890 (SHYC_00905) - 213689..214126 (-) 438 WP_231912790.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein -
  SHYC_RS00895 (SHYC_00910) braR 214257..214922 (+) 666 WP_039643662.1 response regulator transcription factor Regulator
  SHYC_RS00900 (SHYC_00915) braS 214931..215842 (+) 912 WP_039643664.1 sensor histidine kinase Regulator
  SHYC_RS00905 (SHYC_00920) - 215933..216682 (+) 750 WP_039643665.1 ABC transporter ATP-binding protein -
  SHYC_RS00910 (SHYC_00925) - 216684..218645 (+) 1962 WP_039643667.1 ABC transporter permease -
  SHYC_RS00915 (SHYC_00930) - 218882..219508 (-) 627 WP_039643669.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25832.04 Da        Isoelectric Point: 6.6922

>NTDB_id=124017 SHYC_RS00895 WP_039643662.1 214257..214922(+) (braR) [Staphylococcus hyicus strain ATCC 11249]
MKIMIVEDDFTIAESLVKELQKWNHEAVNVQDYYHIAEKFQTLQPHLVLLDINLPHLNGFHWCQEIRQKSQVPIIFISSA
SDNMNQMMAIQMGADDFIEKPFNLKLTIMKIQALLRRSYDFKVEQSQLHVKGCALIVDKALLIYQDQTLSLTLTELQILQ
QLFINEGHFVNRNTLIEHCWQSENFIDDNTLAVNMSRIRKKLKELGLVDFIQTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=124017 SHYC_RS00895 WP_039643662.1 214257..214922(+) (braR) [Staphylococcus hyicus strain ATCC 11249]
ATGAAGATTATGATTGTTGAGGATGATTTTACAATTGCAGAAAGTTTAGTCAAAGAACTTCAAAAATGGAATCACGAAGC
GGTAAATGTGCAAGATTATTATCATATAGCTGAAAAATTCCAAACGCTTCAACCTCACCTCGTTCTTTTAGATATCAACC
TTCCACATCTTAATGGCTTTCATTGGTGTCAGGAAATACGGCAAAAATCTCAAGTACCTATTATATTTATTAGTTCGGCT
TCGGATAATATGAATCAAATGATGGCCATCCAAATGGGGGCTGATGATTTTATAGAAAAGCCGTTTAATTTAAAGTTAAC
AATTATGAAAATTCAAGCGTTATTGAGGCGATCTTATGACTTTAAAGTGGAACAATCTCAGTTACACGTAAAAGGGTGTG
CGTTAATTGTTGATAAAGCTTTATTGATATATCAAGATCAAACGCTGTCGCTAACGCTAACAGAGTTACAAATTTTACAA
CAATTATTTATAAATGAAGGACATTTTGTGAATCGTAATACATTAATTGAGCACTGTTGGCAATCTGAAAATTTCATTGA
TGACAATACGTTAGCAGTAAATATGTCTCGTATACGTAAGAAGTTAAAAGAACTAGGTTTAGTGGATTTTATACAAACGA
AAAAGAATGTAGGATACAAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-105)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

67.873

100

0.679

Multiple sequence alignment