Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SXYLSMQ121_RS08935 Genome accession   NZ_CP008724
Coordinates   1909220..1909783 (-) Length   187 a.a.
NCBI ID   WP_042362967.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain SMQ-121     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904220..1914783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS08905 (SXYLSMQ121_1751) - 1904876..1905814 (+) 939 WP_042362964.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  SXYLSMQ121_RS08910 (SXYLSMQ121_1752) - 1905891..1906457 (-) 567 WP_042362965.1 GNAT family N-acetyltransferase -
  SXYLSMQ121_RS08915 (SXYLSMQ121_1753) - 1906638..1906850 (+) 213 WP_029379120.1 NINE protein -
  SXYLSMQ121_RS08920 (SXYLSMQ121_1754) - 1907451..1907942 (-) 492 WP_042362966.1 hypothetical protein -
  SXYLSMQ121_RS08935 (SXYLSMQ121_1755) comK/comK1 1909220..1909783 (-) 564 WP_042362967.1 competence protein ComK Regulator
  SXYLSMQ121_RS08940 (SXYLSMQ121_1756) - 1910036..1910254 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  SXYLSMQ121_RS08945 (SXYLSMQ121_1757) - 1910354..1911340 (-) 987 WP_042362968.1 lipoate--protein ligase -
  SXYLSMQ121_RS08950 (SXYLSMQ121_1758) - 1911540..1911725 (+) 186 WP_002483735.1 DUF2187 family protein -
  SXYLSMQ121_RS08955 (SXYLSMQ121_1759) - 1911731..1912333 (+) 603 WP_029379125.1 CPBP family glutamic-type intramembrane protease -
  SXYLSMQ121_RS08960 (SXYLSMQ121_1760) - 1912400..1913908 (-) 1509 WP_042362969.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21893.26 Da        Isoelectric Point: 9.5361

>NTDB_id=123891 SXYLSMQ121_RS08935 WP_042362967.1 1909220..1909783(-) (comK/comK1) [Staphylococcus xylosus strain SMQ-121]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=123891 SXYLSMQ121_RS08935 WP_042362967.1 1909220..1909783(-) (comK/comK1) [Staphylococcus xylosus strain SMQ-121]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCAGCAAGAGTCGCCACATTTGAT
CCTGAATCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54

Multiple sequence alignment