Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RC08_RS05005 Genome accession   NZ_CP010510
Coordinates   948760..949311 (+) Length   183 a.a.
NCBI ID   WP_002932771.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 943760..954311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC08_RS04970 (RC08_04965) - 943949..944374 (+) 426 WP_002921415.1 GNAT family N-acetyltransferase -
  RC08_RS04975 (RC08_04970) - 944439..945059 (+) 621 WP_002869051.1 NAD(P)H-dependent oxidoreductase -
  RC08_RS04980 (RC08_04975) - 945059..945664 (+) 606 WP_002871788.1 NAD(P)H-dependent oxidoreductase -
  RC08_RS04985 (RC08_04980) pgsA 945789..946325 (+) 537 WP_002870552.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RC08_RS04990 (RC08_04985) rseP 946322..947428 (+) 1107 WP_002932775.1 RIP metalloprotease RseP -
  RC08_RS04995 (RC08_04990) - 947421..948287 (+) 867 WP_002932773.1 VirK family antimicrobial peptide resistance protein -
  RC08_RS05000 (RC08_04995) rpsF 948374..948751 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  RC08_RS05005 (RC08_05000) ssb 948760..949311 (+) 552 WP_002932771.1 single-stranded DNA-binding protein Machinery gene
  RC08_RS05010 (RC08_05005) rpsR 949322..949582 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  RC08_RS05015 (RC08_05010) lon 949643..952018 (-) 2376 WP_002866098.1 endopeptidase La -
  RC08_RS05020 (RC08_05015) - 952035..952682 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  RC08_RS05025 (RC08_05020) fliW 952843..953232 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  RC08_RS05030 (RC08_05025) proC 953232..953963 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  RC08_RS05035 (RC08_05030) ctsT 953960..954262 (+) 303 WP_002932767.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20741.66 Da        Isoelectric Point: 5.0431

>NTDB_id=123871 RC08_RS05005 WP_002932771.1 948760..949311(+) (ssb) [Campylobacter jejuni strain CJ677CC040]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSSTPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDVYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=123871 RC08_RS05005 WP_002932771.1 948760..949311(+) (ssb) [Campylobacter jejuni strain CJ677CC040]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGTACTGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTGCTTATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATACAAGTTGAAAATATGGAAATGCTTGGAAATTC
CAGCACTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGCGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGTTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.764

97.268

0.377

Multiple sequence alignment