Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SXYLSMQ121_RS04115 Genome accession   NZ_CP008724
Coordinates   905314..905733 (+) Length   139 a.a.
NCBI ID   WP_042362323.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain SMQ-121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 900314..910733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS04085 (SXYLSMQ121_0814) atpD 900354..901766 (+) 1413 WP_042362320.1 F0F1 ATP synthase subunit beta -
  SXYLSMQ121_RS04090 (SXYLSMQ121_0815) - 901786..902190 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  SXYLSMQ121_RS04095 (SXYLSMQ121_0816) - 902532..902765 (+) 234 WP_042362321.1 DUF1146 family protein -
  SXYLSMQ121_RS04100 (SXYLSMQ121_0817) murA 902872..904137 (+) 1266 WP_042362322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SXYLSMQ121_RS04105 (SXYLSMQ121_0818) fabZ 904195..904632 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SXYLSMQ121_RS04110 (SXYLSMQ121_0819) - 904683..905123 (-) 441 WP_017722099.1 YwpF-like family protein -
  SXYLSMQ121_RS04115 (SXYLSMQ121_0820) ssb 905314..905733 (+) 420 WP_042362323.1 single-stranded DNA-binding protein Machinery gene
  SXYLSMQ121_RS04120 (SXYLSMQ121_0821) - 906160..906855 (+) 696 WP_042362324.1 transglycosylase family protein -
  SXYLSMQ121_RS04125 (SXYLSMQ121_0822) tenA 907296..907976 (+) 681 WP_042362325.1 thiaminase II -
  SXYLSMQ121_RS04130 (SXYLSMQ121_0823) thiD 907978..908799 (+) 822 WP_042362326.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SXYLSMQ121_RS04135 (SXYLSMQ121_0824) thiM 908792..909580 (+) 789 WP_042362327.1 hydroxyethylthiazole kinase -
  SXYLSMQ121_RS04140 (SXYLSMQ121_0825) thiE 909583..910221 (+) 639 WP_042362328.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16190.60 Da        Isoelectric Point: 6.4617

>NTDB_id=123873 SXYLSMQ121_RS04115 WP_042362323.1 905314..905733(+) (ssb) [Staphylococcus xylosus strain SMQ-121]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=123873 SXYLSMQ121_RS04115 WP_042362323.1 905314..905733(+) (ssb) [Staphylococcus xylosus strain SMQ-121]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496

Multiple sequence alignment