Detailed information    

insolico Bioinformatically predicted

Overview


Name   CJE0566   Type   Regulator
Locus tag   RB99_RS04745 Genome accession   NZ_CP010502
Coordinates   882248..882898 (-) Length   216 a.a.
NCBI ID   WP_048818573.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC014     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 877248..887898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB99_RS04700 (RB99_04710) - 877405..878259 (-) 855 WP_059116724.1 lambda-exonuclease family protein -
  RB99_RS04705 (RB99_04715) - 878249..878992 (-) 744 WP_048818566.1 phage regulatory protein/antirepressor Ant -
  RB99_RS04710 (RB99_04720) - 878989..879171 (-) 183 WP_002900944.1 hypothetical protein -
  RB99_RS04715 (RB99_04725) - 879316..879531 (+) 216 WP_048818567.1 hypothetical protein -
  RB99_RS09235 - 879501..879665 (-) 165 WP_194717242.1 hypothetical protein -
  RB99_RS04720 (RB99_04730) - 879662..879916 (-) 255 WP_048818568.1 hypothetical protein -
  RB99_RS04725 (RB99_04735) - 879907..880176 (-) 270 WP_048818569.1 hypothetical protein -
  RB99_RS04730 (RB99_04740) - 880726..880998 (-) 273 WP_048818570.1 hypothetical protein -
  RB99_RS04735 (RB99_04745) - 881140..881397 (+) 258 WP_048818571.1 hypothetical protein -
  RB99_RS04740 (RB99_04750) - 881431..882255 (-) 825 WP_048818572.1 hypothetical protein -
  RB99_RS04745 (RB99_04755) CJE0566 882248..882898 (-) 651 WP_048818573.1 DNA/RNA non-specific endonuclease Regulator
  RB99_RS04750 (RB99_04760) - 882895..883245 (-) 351 WP_048818574.1 hypothetical protein -
  RB99_RS04755 (RB99_04765) - 883253..884161 (-) 909 WP_126236744.1 DUF6731 family protein -
  RB99_RS04760 (RB99_04770) - 884170..884901 (-) 732 WP_002865053.1 S24 family peptidase -
  RB99_RS04765 (RB99_04775) - 885046..885261 (+) 216 WP_048818576.1 hypothetical protein -
  RB99_RS08995 - 885357..885656 (+) 300 WP_002861657.1 hypothetical protein -
  RB99_RS04775 (RB99_04785) - 885653..886654 (+) 1002 WP_048818580.1 hypothetical protein -
  RB99_RS04780 (RB99_04790) - 886665..887312 (+) 648 WP_048818581.1 hypothetical protein -
  RB99_RS04785 (RB99_04795) - 887330..887710 (+) 381 WP_048818583.1 crossover junction endodeoxyribonuclease RusA -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 25475.95 Da        Isoelectric Point: 9.8477

>NTDB_id=123499 RB99_RS04745 WP_048818573.1 882248..882898(-) (CJE0566) [Campylobacter jejuni strain CJ677CC014]
MKKLILLPLLSTLAFADYNQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHEVDNLSIKRYKFNCDG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=123499 RB99_RS04745 WP_048818573.1 882248..882898(-) (CJE0566) [Campylobacter jejuni strain CJ677CC014]
ATGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCCTTTGCTGATTATAATCAATACAAACCAAGTGAAGATTT
TGCCAAGTATTTTACTAAGCAAAACTGCTCACAAGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCCATGAGAAAAACAACCCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGAGAATTTTAAAGAATGTTATCAAGTGCCAAATCATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GCGATGGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

90.698

99.537

0.903

  CJE1441 Campylobacter jejuni RM1221

89.767

99.537

0.894


Multiple sequence alignment