Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H733_RS01020 Genome accession   NZ_CP007805
Coordinates   215470..216162 (-) Length   230 a.a.
NCBI ID   WP_038439227.1    Uniprot ID   -
Organism   Haemophilus influenzae CGSHiCZ412602     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210470..221162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H733_RS00990 (H733_0186) - 210482..212650 (-) 2169 WP_038439223.1 heavy metal translocating P-type ATPase -
  H733_RS00995 (H733_0187) - 212625..212831 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  H733_RS01000 (H733_0188) - 212905..213111 (-) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  H733_RS01005 (H733_0189) cueR 213188..213574 (+) 387 WP_038439225.1 Cu(I)-responsive transcriptional regulator -
  H733_RS01010 (H733_0190) metJ 213588..213905 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  H733_RS01015 (H733_0191) rho 214153..215415 (+) 1263 WP_005666690.1 transcription termination factor Rho -
  H733_RS01020 (H733_0192) pilD 215470..216162 (-) 693 WP_038439227.1 prepilin peptidase Machinery gene
  H733_RS01025 (H733_0193) pilC 216159..217379 (-) 1221 WP_038439228.1 type II secretion system F family protein Machinery gene
  H733_RS01030 (H733_0194) pilB 217376..218773 (-) 1398 WP_038439229.1 GspE/PulE family protein Machinery gene
  H733_RS01035 (H733_0195) pilA 218770..219219 (-) 450 WP_038439231.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H733_RS01040 (H733_0196) ampD 219334..219885 (+) 552 WP_038439232.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26759.77 Da        Isoelectric Point: 8.8544

>NTDB_id=123472 H733_RS01020 WP_038439227.1 215470..216162(-) (pilD) [Haemophilus influenzae CGSHiCZ412602]
MIYFAMFLLGGILGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWFGLTLLILWAISYLDWHYQLISTTPCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYTIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=123472 H733_RS01020 WP_038439227.1 215470..216162(-) (pilD) [Haemophilus influenzae CGSHiCZ412602]
ATGATTTACTTCGCAATGTTTTTATTAGGCGGCATCTTAGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTTTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGTTCGGGCTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACGACACCCTGTTTATGGCTACTTACAATCGGTTTATTTGGCGCAGACAATAACTTTTCATTGCTTACGT
TATCTGAAAGTATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACACAATCTATTGGATTGCAAAATTCTATTACGGC
AAAGAAGCCTTTGGACGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTGCCGCACTT
TTTATTATTAGCCTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCGGCTGTCATCATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

90.87

100

0.909
  pilD Haemophilus influenzae 86-028NP

90.87

100

0.909

Multiple sequence alignment