Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC16712_RS04765 Genome accession   NZ_CP007778
Coordinates   936799..937566 (-) Length   255 a.a.
NCBI ID   WP_039641686.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 931799..942566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS04740 (UPTC16712_0940) flhA 932338..934497 (-) 2160 WP_039618502.1 flagellar biosynthesis protein FlhA -
  UPTC16712_RS04745 (UPTC16712_0941) - 934490..934894 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  UPTC16712_RS04750 (UPTC16712_0942) rpsO 935072..935344 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  UPTC16712_RS04755 (UPTC16712_0943) - 935536..936429 (-) 894 WP_039641684.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC16712_RS04760 (UPTC16712_0944) ruvX 936416..936802 (-) 387 WP_039626400.1 Holliday junction resolvase RuvX -
  UPTC16712_RS04765 (UPTC16712_0945) dprA 936799..937566 (-) 768 WP_039641686.1 DNA-processing protein DprA Machinery gene
  UPTC16712_RS04770 (UPTC16712_0946) - 937553..938611 (-) 1059 WP_039642554.1 polysaccharide deacetylase family protein -
  UPTC16712_RS04775 (UPTC16712_0947) ilvC 938622..939644 (-) 1023 WP_012661655.1 ketol-acid reductoisomerase -
  UPTC16712_RS04780 (UPTC16712_0948) - 939752..941692 (+) 1941 WP_039641689.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28691.34 Da        Isoelectric Point: 6.9633

>NTDB_id=123324 UPTC16712_RS04765 WP_039641686.1 936799..937566(-) (dprA) [Campylobacter lari RM16712]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKAKVCVVSGGALGVDIQAAKIA
HPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVIIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123324 UPTC16712_RS04765 WP_039641686.1 936799..937566(-) (dprA) [Campylobacter lari RM16712]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTGGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TGACTTTGTTAAAAAAAGCTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
CATCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGAAATTATAAGGCAAAGCCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTATTATAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCAACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.776

90.98

0.553
  dprA Helicobacter pylori 26695

44.758

97.255

0.435

Multiple sequence alignment