Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC16712_RS04700 Genome accession   NZ_CP007778
Coordinates   925963..926616 (+) Length   217 a.a.
NCBI ID   WP_039641666.1    Uniprot ID   -
Organism   Campylobacter lari RM16712     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 920963..931616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16712_RS04675 (UPTC16712_0927) - 921066..922586 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC16712_RS04680 (UPTC16712_0928) pdxA 922633..923733 (-) 1101 WP_039641659.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC16712_RS04685 (UPTC16712_0929) - 923730..924497 (-) 768 WP_039641661.1 pyridoxine 5'-phosphate synthase -
  UPTC16712_RS04690 (UPTC16712_0930) - 924553..925512 (+) 960 WP_039641664.1 exopolyphosphatase, Ppx/GppA family -
  UPTC16712_RS04695 (UPTC16712_0931) - 925523..925966 (+) 444 WP_039618486.1 GatB/YqeY domain-containing protein -
  UPTC16712_RS04700 (UPTC16712_0932) CJE0566 925963..926616 (+) 654 WP_039641666.1 DNA/RNA endonuclease G Regulator
  UPTC16712_RS04705 (UPTC16712_0933) dnaK 926648..928510 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  UPTC16712_RS04710 (UPTC16712_0934) - 928542..928763 (-) 222 WP_039641671.1 hypothetical protein -
  UPTC16712_RS04715 (UPTC16712_0935) grpE 928782..929291 (-) 510 WP_039641673.1 nucleotide exchange factor GrpE -
  UPTC16712_RS04720 (UPTC16712_0936) - 929288..930070 (-) 783 WP_039641676.1 HrcA family transcriptional regulator -
  UPTC16712_RS08555 - 930310..930441 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC16712_RS04725 (UPTC16712_0937) - 930430..931059 (-) 630 WP_039641678.1 hypothetical protein -
  UPTC16712_RS04730 (UPTC16712_0938) - 931056..931292 (-) 237 WP_039641679.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25986.91 Da        Isoelectric Point: 9.6671

>NTDB_id=123323 UPTC16712_RS04700 WP_039641666.1 925963..926616(+) (CJE0566) [Campylobacter lari RM16712]
MKKVLILCALALSSFAYTQYELHPSFKDYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123323 UPTC16712_RS04700 WP_039641666.1 925963..926616(+) (CJE0566) [Campylobacter lari RM16712]
ATGAAAAAAGTTTTAATACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTGCATCCTAGCTTTAA
AGATTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCTATTGCTTATAAACTAGAGGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

63.184

92.627

0.585

Multiple sequence alignment