Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC16701_RS04570 Genome accession   NZ_CP007777
Coordinates   897492..898259 (-) Length   255 a.a.
NCBI ID   WP_039618513.1    Uniprot ID   -
Organism   Campylobacter lari RM16701     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 892492..903259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16701_RS04545 (UPTC16701_0909) flhA 893031..895190 (-) 2160 WP_039618502.1 flagellar biosynthesis protein FlhA -
  UPTC16701_RS04550 (UPTC16701_0910) - 895183..895587 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  UPTC16701_RS04555 (UPTC16701_0911) rpsO 895765..896037 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  UPTC16701_RS04560 (UPTC16701_0912) - 896229..897122 (-) 894 WP_039618508.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC16701_RS04565 (UPTC16701_0913) ruvX 897109..897495 (-) 387 WP_039618510.1 Holliday junction resolvase RuvX -
  UPTC16701_RS04570 (UPTC16701_0914) dprA 897492..898259 (-) 768 WP_039618513.1 DNA-processing protein DprA Machinery gene
  UPTC16701_RS04575 (UPTC16701_0915) - 898246..899286 (-) 1041 WP_236681175.1 divergent polysaccharide deacetylase family protein -
  UPTC16701_RS04580 (UPTC16701_0916) ilvC 899315..900337 (-) 1023 WP_012661655.1 ketol-acid reductoisomerase -
  UPTC16701_RS04585 (UPTC16701_0917) - 900445..902385 (+) 1941 WP_039618516.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28701.31 Da        Isoelectric Point: 6.8706

>NTDB_id=123307 UPTC16701_RS04570 WP_039618513.1 897492..898259(-) (dprA) [Campylobacter lari RM16701]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKAKVSVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVIIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123307 UPTC16701_RS04570 WP_039618513.1 897492..898259(-) (dprA) [Campylobacter lari RM16701]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTGGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TGACTTTGTTAAAAAAAGCTAAGGTTAGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
TATCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGAAATTATAAGGCAAAGCCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTATTATAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCAACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.345

90.98

0.549
  dprA Helicobacter pylori 26695

44.758

97.255

0.435

Multiple sequence alignment