Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC16701_RS04510 Genome accession   NZ_CP007777
Coordinates   886906..887559 (+) Length   217 a.a.
NCBI ID   WP_039618489.1    Uniprot ID   -
Organism   Campylobacter lari RM16701     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 881906..892559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC16701_RS04485 (UPTC16701_0897) - 882009..883529 (-) 1521 WP_039618479.1 inorganic phosphate transporter -
  UPTC16701_RS04490 (UPTC16701_0898) pdxA 883576..884676 (-) 1101 WP_039618480.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC16701_RS04495 (UPTC16701_0899) - 884673..885440 (-) 768 WP_039618482.1 pyridoxine 5'-phosphate synthase -
  UPTC16701_RS04500 (UPTC16701_0900) - 885496..886455 (+) 960 WP_039618484.1 exopolyphosphatase, Ppx/GppA family -
  UPTC16701_RS04505 (UPTC16701_0901) - 886466..886909 (+) 444 WP_039618486.1 GatB/YqeY domain-containing protein -
  UPTC16701_RS04510 (UPTC16701_0902) CJE0566 886906..887559 (+) 654 WP_039618489.1 DNA/RNA endonuclease G Regulator
  UPTC16701_RS04515 (UPTC16701_0903) dnaK 887590..889452 (-) 1863 WP_039618490.1 molecular chaperone DnaK -
  UPTC16701_RS04520 (UPTC16701_0904) grpE 889475..889984 (-) 510 WP_039618493.1 nucleotide exchange factor GrpE -
  UPTC16701_RS04525 (UPTC16701_0905) - 889981..890763 (-) 783 WP_039618495.1 HrcA family transcriptional regulator -
  UPTC16701_RS08030 - 891003..891134 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC16701_RS04530 (UPTC16701_0906) - 891123..891752 (-) 630 WP_039618496.1 hypothetical protein -
  UPTC16701_RS04535 (UPTC16701_0907) - 891749..891985 (-) 237 WP_039618498.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25956.88 Da        Isoelectric Point: 9.7361

>NTDB_id=123306 UPTC16701_RS04510 WP_039618489.1 886906..887559(+) (CJE0566) [Campylobacter lari RM16701]
MKKVLTLCALALSSFAYTQYELHPSFKPYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123306 UPTC16701_RS04510 WP_039618489.1 886906..887559(+) (CJE0566) [Campylobacter lari RM16701]
ATGAAAAAAGTTTTAACACTTTGTGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAGTTACATCCTAGCTTTAA
GCCGTATTTTAAAGACTGCTCTTTATTGATGGATAAGTATTATTATATCAATTGTTATGATTATAATTATAAAGGCACTA
AGGCAATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGGCACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGCTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATCAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATACTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTTCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment