Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC4110_RS04615 Genome accession   NZ_CP007776
Coordinates   891663..892430 (-) Length   255 a.a.
NCBI ID   WP_039628422.1    Uniprot ID   -
Organism   Campylobacter lari CCUG 22395     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 886663..897430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC4110_RS04590 (UPTC4110_0918) flhA 887202..889361 (-) 2160 WP_039618502.1 flagellar biosynthesis protein FlhA -
  UPTC4110_RS04595 (UPTC4110_0919) - 889354..889758 (-) 405 WP_039618504.1 Rrf2 family transcriptional regulator -
  UPTC4110_RS04600 (UPTC4110_0920) rpsO 889936..890208 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  UPTC4110_RS04605 (UPTC4110_0921) - 890400..891293 (-) 894 WP_039628420.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC4110_RS04610 (UPTC4110_0922) ruvX 891280..891666 (-) 387 WP_039626400.1 Holliday junction resolvase RuvX -
  UPTC4110_RS04615 (UPTC4110_0923) dprA 891663..892430 (-) 768 WP_039628422.1 DNA-processing protein DprA Machinery gene
  UPTC4110_RS04620 (UPTC4110_0924) - 892417..893484 (-) 1068 WP_236718784.1 divergent polysaccharide deacetylase family protein -
  UPTC4110_RS04625 (UPTC4110_0925) ilvC 893486..894508 (-) 1023 WP_039628423.1 ketol-acid reductoisomerase -
  UPTC4110_RS04630 (UPTC4110_0926) - 894616..896556 (+) 1941 WP_039628424.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28679.28 Da        Isoelectric Point: 6.8617

>NTDB_id=123291 UPTC4110_RS04615 WP_039628422.1 891663..892430(-) (dprA) [Campylobacter lari CCUG 22395]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAIIGSRKMSVYTKNCLVELVTLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSMQSARLA
LGMNKSIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123291 UPTC4110_RS04615 WP_039628422.1 891663..892430(-) (dprA) [Campylobacter lari CCUG 22395]
ATGAAATTTATTGAGAATATTGAAGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTGGCTATTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TAACTTTGTTAAAAAAAGCTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCC
TATCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGAAATTATAAGGCAAAGCCTTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTGTAATAGCCCAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAATCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCAACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

44.355

97.255

0.431

Multiple sequence alignment