Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   UPTC4110_RS04555 Genome accession   NZ_CP007776
Coordinates   881076..881729 (+) Length   217 a.a.
NCBI ID   WP_039628414.1    Uniprot ID   -
Organism   Campylobacter lari CCUG 22395     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 876076..886729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC4110_RS04530 (UPTC4110_0906) - 876179..877699 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  UPTC4110_RS04535 (UPTC4110_0907) pdxA 877746..878846 (-) 1101 WP_039628410.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC4110_RS04540 (UPTC4110_0908) - 878843..879610 (-) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  UPTC4110_RS04545 (UPTC4110_0909) - 879666..880625 (+) 960 WP_039628412.1 exopolyphosphatase, Ppx/GppA family -
  UPTC4110_RS04550 (UPTC4110_0910) - 880636..881079 (+) 444 WP_039628413.1 GatB/YqeY domain-containing protein -
  UPTC4110_RS04555 (UPTC4110_0911) CJE0566 881076..881729 (+) 654 WP_039628414.1 DNA/RNA endonuclease G Regulator
  UPTC4110_RS04560 (UPTC4110_0912) dnaK 881761..883623 (-) 1863 WP_039628415.1 molecular chaperone DnaK -
  UPTC4110_RS04565 (UPTC4110_0913) grpE 883646..884155 (-) 510 WP_039628416.1 nucleotide exchange factor GrpE -
  UPTC4110_RS04570 (UPTC4110_0914) - 884152..884934 (-) 783 WP_039628417.1 HrcA family transcriptional regulator -
  UPTC4110_RS08040 - 885174..885305 (+) 132 WP_256374638.1 hypothetical protein -
  UPTC4110_RS04575 (UPTC4110_0915) - 885294..885923 (-) 630 WP_039628418.1 hypothetical protein -
  UPTC4110_RS04580 (UPTC4110_0916) - 885920..886156 (-) 237 WP_039626390.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25883.75 Da        Isoelectric Point: 9.6672

>NTDB_id=123290 UPTC4110_RS04555 WP_039628414.1 881076..881729(+) (CJE0566) [Campylobacter lari CCUG 22395]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLA
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123290 UPTC4110_RS04555 WP_039628414.1 881076..881729(+) (CJE0566) [Campylobacter lari CCUG 22395]
ATGAAAAAAGTTTTAACGCTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGCA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

61.692

92.627

0.571

Multiple sequence alignment