Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UPTC3659_RS05825 Genome accession   NZ_CP007775
Coordinates   1164851..1165618 (-) Length   255 a.a.
NCBI ID   WP_039626402.1    Uniprot ID   A0A0A8HWX9
Organism   Campylobacter lari NCTC 11845     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1159851..1170618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS05800 (UPTC3659_1154) flhA 1160389..1162548 (-) 2160 WP_039626394.1 flagellar biosynthesis protein FlhA -
  UPTC3659_RS05805 (UPTC3659_1155) - 1162541..1162945 (-) 405 WP_039626396.1 Rrf2 family transcriptional regulator -
  UPTC3659_RS05810 (UPTC3659_1156) rpsO 1163126..1163398 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  UPTC3659_RS05815 (UPTC3659_1157) - 1163588..1164481 (-) 894 WP_039626398.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  UPTC3659_RS05820 (UPTC3659_1158) ruvX 1164468..1164854 (-) 387 WP_039626400.1 Holliday junction resolvase RuvX -
  UPTC3659_RS05825 (UPTC3659_1159) dprA 1164851..1165618 (-) 768 WP_039626402.1 DNA-processing protein DprA Machinery gene
  UPTC3659_RS05830 (UPTC3659_1160) - 1165605..1166621 (-) 1017 WP_236681648.1 divergent polysaccharide deacetylase family protein -
  UPTC3659_RS05835 (UPTC3659_1161) ilvC 1166674..1167696 (-) 1023 WP_039626404.1 ketol-acid reductoisomerase -
  UPTC3659_RS05840 (UPTC3659_1162) - 1167804..1169744 (+) 1941 WP_039626405.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28659.25 Da        Isoelectric Point: 6.8615

>NTDB_id=123274 UPTC3659_RS05825 WP_039626402.1 1164851..1165618(-) (dprA) [Campylobacter lari NCTC 11845]
MKFIDNIEDFKNLLNPPSRIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVALLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLVIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGEFHQEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123274 UPTC3659_RS05825 WP_039626402.1 1164851..1165618(-) (dprA) [Campylobacter lari NCTC 11845]
ATGAAATTTATTGATAATATTGAAGATTTTAAAAATCTTTTAAATCCACCTTCAAGGATTTATTATAAAGGCAATTTAGA
GCTTTTAAATGCTAGAAAAGTGGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGTCTTGTTGAATTGG
TAGCTTTGTTAAAAAAAGCTAAGGTTTGTGTAGTAAGTGGCGGGGCTTTAGGGGTGGATATCCAAGCAGCTAAAATAGCT
TATCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTGGCTTTAAGTGAAAATGAAGGAAATTACAAGGCAAAACCCTATGATTTTTTATTAAGAAATAGAC
TTGTTATAGCTTTAAGTGAGGTTGTTATAATAGCACAAGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGCGAAGGAACAAATTTGCTTTTAGCAACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTGTAAAAATGTTTGGAGAGTTTCATCAAGAGCAAAGCGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTAGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HWX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

44.813

94.51

0.424

Multiple sequence alignment