Detailed information    

insolico Bioinformatically predicted

Overview


Name   CJE0566   Type   Regulator
Locus tag   UPTC3659_RS05755 Genome accession   NZ_CP007775
Coordinates   1150074..1150730 (+) Length   218 a.a.
NCBI ID   WP_039626378.1    Uniprot ID   A0A0A8HVY4
Organism   Campylobacter lari NCTC 11845     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1145074..1155730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC3659_RS05730 (UPTC3659_1140) - 1145177..1146697 (-) 1521 WP_039626368.1 inorganic phosphate transporter -
  UPTC3659_RS05735 (UPTC3659_1141) pdxA 1146744..1147844 (-) 1101 WP_039626370.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  UPTC3659_RS05740 (UPTC3659_1142) - 1147841..1148608 (-) 768 WP_039626372.1 pyridoxine 5'-phosphate synthase -
  UPTC3659_RS05745 (UPTC3659_1143) - 1148664..1149623 (+) 960 WP_039626374.1 exopolyphosphatase, Ppx/GppA family -
  UPTC3659_RS05750 (UPTC3659_1144) - 1149634..1150077 (+) 444 WP_039626376.1 GatB/YqeY domain-containing protein -
  UPTC3659_RS05755 (UPTC3659_1145) CJE0566 1150074..1150730 (+) 657 WP_039626378.1 DNA/RNA endonuclease G Regulator
  UPTC3659_RS05760 (UPTC3659_1146) - 1150801..1154673 (+) 3873 WP_039626380.1 filamentous hemagglutinin N-terminal domain-containing protein -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 26227.18 Da        Isoelectric Point: 9.7797

>NTDB_id=123273 UPTC3659_RS05755 WP_039626378.1 1150074..1150730(+) (CJE0566) [Campylobacter lari NCTC 11845]
MKKFLTLCALALSSFAYTQYELHPSFKEYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQDDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCRKYIKY

Nucleotide


Download         Length: 657 bp        

>NTDB_id=123273 UPTC3659_RS05755 WP_039626378.1 1150074..1150730(+) (CJE0566) [Campylobacter lari NCTC 11845]
ATGAAAAAATTTCTAACACTTTGTGCTTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAACTACACCCTAGCTTTAA
AGAGTATTTTAAAGATTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGTCCAAGATTTCAAGATGATACC
AACATACCCAAAAAATACAGAACTTATTGGGAAGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTCTAATGAGTAACATAACTCCGCAAAAAAAAGATATCAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAGAA
AATATATCAAATACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0A8HVY4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.908

99.541

0.596

  CJE1441 Campylobacter jejuni RM1221

63.184

92.202

0.583


Multiple sequence alignment