Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CVOL_RS04635 Genome accession   NZ_CP007774
Coordinates   888005..888772 (-) Length   255 a.a.
NCBI ID   WP_039665664.1    Uniprot ID   A0AAE6CZP2
Organism   Campylobacter volucris LMG 24379     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 883005..893772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVOL_RS04610 (CVOL_0917) flhA 883519..885678 (-) 2160 WP_039665660.1 flagellar biosynthesis protein FlhA -
  CVOL_RS04615 (CVOL_0918) - 885671..886075 (-) 405 WP_039665661.1 Rrf2 family transcriptional regulator -
  CVOL_RS04620 (CVOL_0919) rpsO 886280..886552 (+) 273 WP_039665662.1 30S ribosomal protein S15 -
  CVOL_RS04625 (CVOL_0920) - 886749..887635 (-) 887 Protein_900 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CVOL_RS04630 (CVOL_0921) ruvX 887622..888008 (-) 387 WP_039665663.1 Holliday junction resolvase RuvX -
  CVOL_RS04635 (CVOL_0922) dprA 888005..888772 (-) 768 WP_039665664.1 DNA-processing protein DprA Machinery gene
  CVOL_RS04640 (CVOL_0923) - 888756..889862 (-) 1107 WP_039665665.1 divergent polysaccharide deacetylase family protein -
  CVOL_RS04645 (CVOL_0924) ilvC 889863..890885 (-) 1023 WP_039665666.1 ketol-acid reductoisomerase -
  CVOL_RS04650 (CVOL_0925) - 890998..892938 (+) 1941 WP_039665667.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28842.45 Da        Isoelectric Point: 8.2840

>NTDB_id=123255 CVOL_RS04635 WP_039665664.1 888005..888772(-) (dprA) [Campylobacter volucris LMG 24379]
MKSINNIKEFNSLKDPPANVYYKGNLELLKNRKIAIIGSRKMSVYTKNCIYELVNCCKSAQICIVSGGALGVDITAANAA
FPNTIAIFANGLDEIYPKSNKKYIEQIYEHALALSEHEAFYKPKPYDFLLRNRLIIALSEVVIIAQADLYSGSMQSARLA
LSMKKPIYVLPQRRQESEGTNLLLAKNQAKLLYDFSEFASMFGVLEEKSNNDELLEFIKKENNLDKILQKFGDRIYEYEL
EGLVEICGLSVRVKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123255 CVOL_RS04635 WP_039665664.1 888005..888772(-) (dprA) [Campylobacter volucris LMG 24379]
ATGAAATCTATAAATAATATTAAAGAATTTAATTCTTTAAAAGATCCTCCAGCTAATGTGTATTATAAAGGAAATTTAGA
ACTTTTAAAAAATAGAAAAATAGCAATTATTGGCTCAAGAAAAATGAGTGTTTATACTAAAAATTGTATTTATGAGCTTG
TAAATTGTTGTAAAAGCGCACAAATTTGTATAGTAAGTGGTGGAGCTTTGGGGGTAGATATCACAGCTGCTAATGCTGCA
TTTCCAAATACTATAGCTATTTTTGCTAATGGTCTTGATGAAATTTATCCAAAAAGCAATAAAAAATATATCGAGCAAAT
TTATGAACATGCTTTAGCTTTAAGCGAACACGAAGCTTTTTATAAACCCAAGCCTTATGATTTTTTACTTAGAAATCGCC
TAATTATTGCTTTAAGCGAAGTTGTGATTATAGCTCAAGCTGATTTATATAGTGGTTCTATGCAGAGTGCAAGACTTGCT
TTAAGTATGAAAAAACCTATATATGTTTTACCTCAAAGAAGGCAAGAAAGTGAAGGTACAAATTTACTTCTAGCAAAAAA
TCAAGCTAAATTGCTTTATGATTTTTCTGAATTTGCTTCTATGTTTGGAGTTTTAGAAGAAAAAAGTAATAATGATGAGT
TGTTAGAATTTATTAAAAAAGAGAATAATTTAGATAAAATTTTGCAAAAATTTGGCGATAGAATTTATGAGTATGAGCTT
GAGGGTTTGGTTGAAATTTGTGGCTTGAGCGTGAGAGTTAAGTCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.948

91.373

0.584
  dprA Helicobacter pylori 26695

45.382

97.647

0.443

Multiple sequence alignment