Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSUB8523_RS06120 Genome accession   NZ_CP007773
Coordinates   1180410..1181177 (-) Length   255 a.a.
NCBI ID   WP_043019928.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24377     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1175410..1186177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8523_RS06095 (CSUB8523_1213) flhA 1175953..1178112 (-) 2160 WP_043019925.1 flagellar biosynthesis protein FlhA -
  CSUB8523_RS06100 (CSUB8523_1214) - 1178105..1178509 (-) 405 WP_043019926.1 Rrf2 family transcriptional regulator -
  CSUB8523_RS06105 (CSUB8523_1215) rpsO 1178688..1178960 (+) 273 WP_039618506.1 30S ribosomal protein S15 -
  CSUB8523_RS06110 (CSUB8523_1216) - 1179147..1180040 (-) 894 WP_052243683.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CSUB8523_RS06115 (CSUB8523_1217) ruvX 1180027..1180413 (-) 387 WP_043019927.1 Holliday junction resolvase RuvX -
  CSUB8523_RS06120 (CSUB8523_1218) dprA 1180410..1181177 (-) 768 WP_043019928.1 DNA-processing protein DprA Machinery gene
  CSUB8523_RS06125 (CSUB8523_1219) - 1181164..1182252 (-) 1089 WP_069107232.1 divergent polysaccharide deacetylase family protein -
  CSUB8523_RS06130 (CSUB8523_1220) ilvC 1182233..1183255 (-) 1023 WP_043019930.1 ketol-acid reductoisomerase -
  CSUB8523_RS06135 (CSUB8523_1221) - 1183365..1185305 (+) 1941 WP_043019931.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28720.34 Da        Isoelectric Point: 7.2866

>NTDB_id=123238 CSUB8523_RS06120 WP_043019928.1 1180410..1181177(-) (dprA) [Campylobacter subantarcticus LMG 24377]
MKFIDHLEAFDELLNPPARVYYKGNLKLLESRKVAIIGSRRMSVYTKNSLIELVSFLKKAKVCVVSGGALGVDIHAARLA
YPHTIAIFANGLDEIYPKANTSDILDIYNNALALSENVPDYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSMQSARLA
LSMNKPIYVLPHRKNESEGTNLLLAQNKAKLLYDYQQFAAMFGELECKQQQDDLLNFIKNEDDLEKVLQKFGDKVYEYEL
EGLVEISGVKIRVCV

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123238 CSUB8523_RS06120 WP_043019928.1 1180410..1181177(-) (dprA) [Campylobacter subantarcticus LMG 24377]
ATGAAATTTATTGACCATCTTGAAGCTTTTGATGAACTTTTAAATCCTCCTGCTAGGGTGTATTATAAAGGAAATTTGAA
GCTTTTAGAATCTAGGAAAGTTGCAATTATTGGTTCTAGAAGAATGAGTGTTTATACTAAAAACTCTCTTATAGAGCTTG
TGTCATTTTTAAAAAAAGCTAAAGTGTGTGTGGTAAGTGGTGGAGCTTTGGGGGTAGATATTCACGCTGCAAGGTTGGCT
TATCCGCATACTATAGCGATCTTTGCAAATGGCTTAGATGAAATTTATCCCAAAGCTAATACAAGTGATATTTTGGATAT
TTATAACAATGCTTTAGCATTGAGTGAAAATGTACCAGATTATAAAGCCAAGCCTTATGATTTTTTACTGCGAAATAGAC
TAATCATTGCTTTAAGCGAAGTGGTGGTGATCGCACAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAAGTATGAATAAACCCATTTATGTACTTCCTCATAGAAAAAATGAAAGCGAAGGGACTAATTTGCTTTTGGCTCAAAA
TAAAGCTAAATTGCTTTATGATTATCAGCAATTTGCAGCGATGTTTGGAGAGCTTGAGTGTAAACAGCAACAAGATGACT
TGTTAAATTTTATAAAAAACGAAGATGACTTAGAGAAAGTTTTGCAAAAATTTGGCGATAAAGTTTATGAATATGAGCTT
GAAGGTTTAGTGGAAATTTCTGGAGTAAAAATAAGAGTTTGTGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.438

97.647

0.58
  dprA Helicobacter pylori 26695

46.091

95.294

0.439

Multiple sequence alignment