Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CSUB8523_RS06055 Genome accession   NZ_CP007773
Coordinates   1169611..1170264 (+) Length   217 a.a.
NCBI ID   WP_043019921.1    Uniprot ID   -
Organism   Campylobacter subantarcticus LMG 24377     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164611..1175264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8523_RS06030 (CSUB8523_1200) - 1164709..1166229 (-) 1521 WP_043019917.1 inorganic phosphate transporter -
  CSUB8523_RS06035 (CSUB8523_1201) pdxA 1166275..1167375 (-) 1101 WP_043019918.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CSUB8523_RS06040 (CSUB8523_1202) - 1167372..1168139 (-) 768 WP_043019919.1 pyridoxine 5'-phosphate synthase -
  CSUB8523_RS06045 (CSUB8523_1203) - 1168196..1169050 (+) 855 WP_235362550.1 Ppx/GppA family phosphatase -
  CSUB8523_RS06050 (CSUB8523_1204) - 1169171..1169614 (+) 444 WP_043019920.1 GatB/YqeY domain-containing protein -
  CSUB8523_RS06055 (CSUB8523_1205) CJE0566 1169611..1170264 (+) 654 WP_043019921.1 DNA/RNA endonuclease G Regulator
  CSUB8523_RS06060 (CSUB8523_1206) dnaK 1170299..1172161 (-) 1863 WP_043019922.1 molecular chaperone DnaK -
  CSUB8523_RS06065 (CSUB8523_1207) - 1172192..1172413 (-) 222 WP_039641671.1 hypothetical protein -
  CSUB8523_RS06070 (CSUB8523_1208) grpE 1172432..1172941 (-) 510 WP_043019923.1 nucleotide exchange factor GrpE -
  CSUB8523_RS06075 (CSUB8523_1209) - 1172938..1173689 (-) 752 Protein_1207 HrcA family transcriptional regulator -
  CSUB8523_RS10560 - 1173925..1174056 (+) 132 WP_256378632.1 hypothetical protein -
  CSUB8523_RS06080 (CSUB8523_1210) - 1174045..1174674 (-) 630 WP_039664140.1 hypothetical protein -
  CSUB8523_RS06085 (CSUB8523_1211) - 1174671..1174904 (-) 234 WP_039664141.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25956.88 Da        Isoelectric Point: 9.7361

>NTDB_id=123237 CSUB8523_RS06055 WP_043019921.1 1169611..1170264(+) (CJE0566) [Campylobacter subantarcticus LMG 24377]
MKKVLTLCALALSSFAYTQYELHPSFKPYFKECSLLMDKYYYINCYNYNYKGTKAIAYKLEAKILNQGHIKKRPRFEDDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123237 CSUB8523_RS06055 WP_043019921.1 1169611..1170264(+) (CJE0566) [Campylobacter subantarcticus LMG 24377]
ATGAAAAAAGTTTTAACGCTTTGTGCTTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGTTTTAA
GCCGTATTTTAAAGAATGCTCTTTATTGATGGATAAGTATTATTACATCAATTGTTATAATTATAATTATAAGGGTACCA
AGGCCATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGGCACATCAAAAAACGCCCACGCTTTGAAGATGATACC
AATATCCCTAAAAAATACAGAACTTACTGGGAGGATTACCTAAGAAGCGGCTACACAAGAGGACATGTCGTGCCTAATCA
ATCCATGAATGCAACTCCACAAGCCCAACTTAGCACTTTTTTAATGAGTAATATCACACCACAAAAAAAAGATATCAATG
CTGAAATTTGGAATGAAATCGAACAAAGAGAGCGGTATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTG
CTTTATGATGACAAACCAAAACGCATTAAAAACAATATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTTAGCGAATGTTATAAAGTGCCAAATAACGATAATTTTGCAAGATTTGACAGAAATTATTTCAAAGAAGACTGTAAGA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.908

100

0.599
  CJE1441 Campylobacter jejuni RM1221

63.184

92.627

0.585

Multiple sequence alignment