Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSUB8521_RS05575 Genome accession   NZ_CP007772
Coordinates   1098822..1099589 (-) Length   255 a.a.
NCBI ID   WP_039664147.1    Uniprot ID   A0A0A8HAG6
Organism   Campylobacter subantarcticus LMG 24374     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1093822..1104589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8521_RS05550 (CSUB8521_1107) flhA 1094354..1096513 (-) 2160 WP_039664143.1 flagellar biosynthesis protein FlhA -
  CSUB8521_RS05555 (CSUB8521_1108) - 1096506..1096910 (-) 405 WP_039664144.1 Rrf2 family transcriptional regulator -
  CSUB8521_RS05560 (CSUB8521_1109) rpsO 1097090..1097362 (+) 273 WP_039664145.1 30S ribosomal protein S15 -
  CSUB8521_RS05565 (CSUB8521_1110) - 1097559..1098452 (-) 894 WP_052242997.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CSUB8521_RS05570 (CSUB8521_1111) ruvX 1098439..1098825 (-) 387 WP_039664146.1 Holliday junction resolvase RuvX -
  CSUB8521_RS05575 (CSUB8521_1112) dprA 1098822..1099589 (-) 768 WP_039664147.1 DNA-processing protein DprA Machinery gene
  CSUB8521_RS05580 (CSUB8521_1113) - 1099576..1100643 (-) 1068 WP_039664148.1 divergent polysaccharide deacetylase family protein -
  CSUB8521_RS05585 (CSUB8521_1114) ilvC 1100645..1101667 (-) 1023 WP_039664149.1 ketol-acid reductoisomerase -
  CSUB8521_RS05590 (CSUB8521_1115) - 1101775..1103715 (+) 1941 WP_039664150.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28669.25 Da        Isoelectric Point: 7.2111

>NTDB_id=123221 CSUB8521_RS05575 WP_039664147.1 1098822..1099589(-) (dprA) [Campylobacter subantarcticus LMG 24374]
MKFIDNLEAFDDLLNPPARVYYKGNLKLLESRKVAIIGSRRMSVYTKNSLIELVSFLKKAKVCVVSGGALGVDIHAARLA
YPHTIAIFANGLDEIYPKANTSDILDIYNNALALSENAPDYKAKPYDFLLRNRLIIALSEVVVIAQADLKSGSMQSARLA
LSMNKPIYVLPHRKNESEGTNLLLAQNKAKLLYDYQQFAAMFGELECKQQQDDLLNFIKNEDDLEKVLQKFGDKVYEYEL
EGLVEISGVKIRVCI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123221 CSUB8521_RS05575 WP_039664147.1 1098822..1099589(-) (dprA) [Campylobacter subantarcticus LMG 24374]
ATGAAATTTATTGACAATCTTGAAGCTTTTGATGATCTTTTAAATCCTCCTGCTAGGGTGTATTATAAAGGAAATTTGAA
GCTTTTAGAATCTAGAAAAGTTGCAATTATTGGTTCTAGAAGAATGAGTGTTTATACTAAAAACTCTCTTATAGAGCTTG
TGTCATTTTTAAAAAAAGCTAAAGTGTGTGTGGTAAGTGGTGGAGCTTTAGGAGTGGATATTCACGCTGCAAGGTTGGCT
TATCCGCATACTATAGCGATCTTTGCAAATGGCTTAGATGAAATTTATCCCAAAGCTAATACAAGTGATATTTTGGATAT
TTATAACAATGCTTTAGCATTGAGTGAAAATGCACCAGATTATAAAGCTAAGCCTTATGATTTTTTACTGCGAAATAGAC
TAATCATTGCTTTAAGCGAAGTGGTGGTGATCGCACAGGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAAGTATGAATAAACCCATTTATGTACTTCCTCATAGAAAAAATGAAAGCGAAGGGACTAATTTGCTTTTGGCTCAAAA
TAAAGCTAAATTGCTTTATGATTATCAGCAATTTGCAGCGATGTTTGGAGAGCTTGAGTGTAAACAGCAACAAGATGACT
TGTTAAATTTTATAAAAAACGAAGATGACTTAGAGAAAGTTTTGCAAAAATTTGGCGATAAAGTTTATGAATATGAGCTT
GAAGGTTTAGTGGAAATTTCTGGAGTAAAAATAAGAGTTTGTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HAG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.324

96.863

0.584
  dprA Helicobacter pylori 26695

46.091

95.294

0.439

Multiple sequence alignment