Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CSUB8521_RS05515 Genome accession   NZ_CP007772
Coordinates   1088260..1088913 (+) Length   217 a.a.
NCBI ID   WP_039664137.1    Uniprot ID   A0A0A8HA37
Organism   Campylobacter subantarcticus LMG 24374     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083260..1093913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSUB8521_RS05490 (CSUB8521_1095) - 1083357..1084877 (-) 1521 WP_039664132.1 inorganic phosphate transporter -
  CSUB8521_RS05495 (CSUB8521_1096) pdxA 1084923..1086023 (-) 1101 WP_039664133.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CSUB8521_RS05500 (CSUB8521_1097) - 1086020..1086787 (-) 768 WP_039664134.1 pyridoxine 5'-phosphate synthase -
  CSUB8521_RS05505 (CSUB8521_1098) - 1086844..1087809 (+) 966 WP_039664135.1 exopolyphosphatase, Ppx/GppA family -
  CSUB8521_RS05510 (CSUB8521_1099) - 1087820..1088263 (+) 444 WP_039664136.1 GatB/YqeY domain-containing protein -
  CSUB8521_RS05515 (CSUB8521_1100) CJE0566 1088260..1088913 (+) 654 WP_039664137.1 DNA/RNA endonuclease G Regulator
  CSUB8521_RS05520 (CSUB8521_1101) dnaK 1088948..1090810 (-) 1863 WP_039664138.1 molecular chaperone DnaK -
  CSUB8521_RS05525 (CSUB8521_1102) grpE 1090833..1091342 (-) 510 WP_039664139.1 nucleotide exchange factor GrpE -
  CSUB8521_RS05530 (CSUB8521_1103) - 1091339..1092089 (-) 751 Protein_1091 HrcA family transcriptional regulator -
  CSUB8521_RS09765 - 1092326..1092457 (+) 132 WP_256378632.1 hypothetical protein -
  CSUB8521_RS05535 (CSUB8521_1104) - 1092446..1093075 (-) 630 WP_039664140.1 hypothetical protein -
  CSUB8521_RS05540 (CSUB8521_1105) - 1093072..1093305 (-) 234 WP_039664141.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25957.87 Da        Isoelectric Point: 9.6671

>NTDB_id=123220 CSUB8521_RS05515 WP_039664137.1 1088260..1088913(+) (CJE0566) [Campylobacter subantarcticus LMG 24374]
MKKVLTLCALALSSFAYTQYELHPSFKPYFKECSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFEDDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123220 CSUB8521_RS05515 WP_039664137.1 1088260..1088913(+) (CJE0566) [Campylobacter subantarcticus LMG 24374]
ATGAAAAAAGTTTTAACGCTTTGTGCTTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGTTTTAA
GCCGTATTTTAAAGAATGCTCTTTATTAATGGATAAGTATTATTACATCAATTGTTATGATTATAATTATAAGGGTACCA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGGCACATCAAAAAACGTCCACGCTTTGAAGATGATACC
AATATCCCTAAAAAATACAGAACTTACTGGGAGGATTACCTAAGAAGCGGCTACACAAGAGGACATGTCGTGCCTAATCA
ATCCATGAATGCAACTCCACAAGCCCAACTTAGCACTTTTTTAATGAGTAATATCACACCACAAAAAAAAGATATCAATG
CTGAAATTTGGAATGAAATCGAACAAAGAGAGCGGTATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTG
CTTTATGATGATAAACCAAAACGCATTAAAAACAATATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTTAGTGAATGTTATAAAGTGCCAAATAACGATAATTTTGCAAGATTTGACAGAAATTATTTCAAAGAAGACTGTAAGA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HA37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

60.369

100

0.604
  CJE1441 Campylobacter jejuni RM1221

63.682

92.627

0.59

Multiple sequence alignment