Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CONCH_RS04505 Genome accession   NZ_CP007771
Coordinates   864896..865663 (-) Length   255 a.a.
NCBI ID   WP_039668493.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus LMG 11760     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 859896..870663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CONCH_RS04480 (CONCH_0893) flhA 860439..862598 (-) 2160 WP_039668489.1 flagellar biosynthesis protein FlhA -
  CONCH_RS04485 (CONCH_0894) - 862591..862995 (-) 405 WP_039668490.1 Rrf2 family transcriptional regulator -
  CONCH_RS04490 (CONCH_0895) rpsO 863172..863444 (+) 273 WP_012661650.1 30S ribosomal protein S15 -
  CONCH_RS04495 (CONCH_0896) - 863633..864526 (-) 894 WP_039668491.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CONCH_RS04500 (CONCH_0897) ruvX 864513..864899 (-) 387 WP_039668492.1 Holliday junction resolvase RuvX -
  CONCH_RS04505 (CONCH_0898) dprA 864896..865663 (-) 768 WP_039668493.1 DNA-processing protein DprA Machinery gene
  CONCH_RS04510 (CONCH_0899) - 865650..866708 (-) 1059 WP_039669064.1 divergent polysaccharide deacetylase family protein -
  CONCH_RS04515 (CONCH_0900) ilvC 866719..867741 (-) 1023 WP_039668494.1 ketol-acid reductoisomerase -
  CONCH_RS04520 (CONCH_0901) - 867849..869789 (+) 1941 WP_039668495.1 VacB/RNase II family 3'-5' exoribonuclease -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28694.25 Da        Isoelectric Point: 6.4973

>NTDB_id=123203 CONCH_RS04505 WP_039668493.1 864896..865663(-) (dprA) [Campylobacter lari subsp. concheus LMG 11760]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLVELVTLLKKTNVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESDGTNLLLATKKANLIHDFDEFTKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123203 CONCH_RS04505 WP_039668493.1 864896..865663(-) (dprA) [Campylobacter lari subsp. concheus LMG 11760]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGTAATTTAGA
GCTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACCAAAAATTGTCTTGTTGAACTGG
TGACTTTGTTAAAAAAAACTAATGTTTGTGTGGTAAGTGGCGGGGCTTTGGGGGTTGATATCCAAGCAGCTAAAATAGCT
TACCCTCAAACCATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAACACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCTTTAAGTGAAAATGAAGGAAATTACAAGGCAAAGCCCTATGATTTTTTATTAAGAAATAGGC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGTGGTTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGTGATGGAACAAATTTGCTTTTAGCTACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAATTTACAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGACGATTTAGAAAAAGTTTTAAAAAAATTTGGCGATAGAGTTTATGAGTATGAACTT
GAGGGTTTGGTAGAAATATCTGGAGTGAAAATAAGAGCTTGCTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.914

90.98

0.545
  dprA Helicobacter pylori 26695

45.161

97.255

0.439

Multiple sequence alignment