Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CONCH_RS04445 Genome accession   NZ_CP007771
Coordinates   854315..854968 (+) Length   217 a.a.
NCBI ID   WP_039668482.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus LMG 11760     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 849315..859968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CONCH_RS04420 (CONCH_0881) - 849418..850938 (-) 1521 WP_039668477.1 inorganic phosphate transporter -
  CONCH_RS04425 (CONCH_0882) pdxA 850985..852085 (-) 1101 WP_039668478.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CONCH_RS04430 (CONCH_0883) - 852082..852849 (-) 768 WP_039668479.1 pyridoxine 5'-phosphate synthase -
  CONCH_RS04435 (CONCH_0884) - 852905..853864 (+) 960 WP_039668480.1 exopolyphosphatase, Ppx/GppA family -
  CONCH_RS04440 (CONCH_0885) - 853875..854318 (+) 444 WP_039668481.1 GatB/YqeY domain-containing protein -
  CONCH_RS04445 (CONCH_0886) CJE0566 854315..854968 (+) 654 WP_039668482.1 DNA/RNA endonuclease G Regulator
  CONCH_RS04450 (CONCH_0887) dnaK 854998..856860 (-) 1863 WP_039668483.1 molecular chaperone DnaK -
  CONCH_RS04455 (CONCH_0888) grpE 856883..857392 (-) 510 WP_039668484.1 nucleotide exchange factor GrpE -
  CONCH_RS04460 (CONCH_0889) - 857389..858171 (-) 783 WP_039668485.1 HrcA family transcriptional regulator -
  CONCH_RS08110 - 858411..858542 (+) 132 WP_256374638.1 hypothetical protein -
  CONCH_RS04465 (CONCH_0890) - 858531..859160 (-) 630 WP_039668486.1 hypothetical protein -
  CONCH_RS04470 (CONCH_0891) - 859157..859393 (-) 237 WP_039668487.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25902.83 Da        Isoelectric Point: 9.7310

>NTDB_id=123202 CONCH_RS04445 WP_039668482.1 854315..854968(+) (CJE0566) [Campylobacter lari subsp. concheus LMG 11760]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NLPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFAKFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=123202 CONCH_RS04445 WP_039668482.1 854315..854968(+) (CJE0566) [Campylobacter lari subsp. concheus LMG 11760]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACACCCTAGCTTTAA
AGCTTATTTTAAAGACTGCTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCAATTGCTTATAAATTAGAAGCTAAAATTTTAAATCAAGGACATATCAAAAAACGCCCAAGATTTCAAGAAGATACA
AATTTACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTACCAAATCA
ATCCATGAATGCAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCGCAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTGAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAATAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGTGAATGCTATAAAGTACCAAATAACGATAATTTTGCAAAATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.986

100

0.59
  CJE1441 Campylobacter jejuni RM1221

62.189

92.627

0.576

Multiple sequence alignment