Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CINS_RS04550 Genome accession   NZ_CP007770
Coordinates   870274..871038 (-) Length   254 a.a.
NCBI ID   WP_039650244.1    Uniprot ID   A0A0A8H1L7
Organism   Campylobacter insulaenigrae NCTC 12927     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 865274..876038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CINS_RS04525 (CINS_0909) flhA 865777..867936 (-) 2160 WP_039650233.1 flagellar biosynthesis protein FlhA -
  CINS_RS04530 (CINS_0910) - 867929..868333 (-) 405 WP_039650235.1 Rrf2 family transcriptional regulator -
  CINS_RS04535 (CINS_0911) rpsO 868544..868816 (+) 273 WP_039650237.1 30S ribosomal protein S15 -
  CINS_RS04540 (CINS_0912) - 869011..869904 (-) 894 WP_039650240.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CINS_RS04545 (CINS_0913) ruvX 869891..870277 (-) 387 WP_039650242.1 Holliday junction resolvase RuvX -
  CINS_RS04550 (CINS_0914) dprA 870274..871038 (-) 765 WP_039650244.1 DNA-processing protein DprA Machinery gene
  CINS_RS04555 (CINS_0915) - 871022..872119 (-) 1098 WP_039650246.1 divergent polysaccharide deacetylase family protein -
  CINS_RS04560 (CINS_0916) ilvC 872120..873142 (-) 1023 WP_039650248.1 ketol-acid reductoisomerase -
  CINS_RS04565 (CINS_0917) - 873262..875202 (+) 1941 WP_039650251.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28649.42 Da        Isoelectric Point: 8.4098

>NTDB_id=123186 CINS_RS04550 WP_039650244.1 870274..871038(-) (dprA) [Campylobacter insulaenigrae NCTC 12927]
MKFINKIEEFDILSKSPDKIYYKGNLELLKKKKIAIIGSRKMSIYTRNCIFELAKLCKNAGICVVSGGALGVDIAAANAA
FPSTIAVFANGLDEIYPKSNKKYIEAIYQEALALSEHDGNYKPKPYDFLLRNRLIVALSEVVVIAQADIQSGSMQSARLA
LDMKKPVYVLPQRIKESEGTNLLLSQKQANLLHDFSHFVSKFGELNKEPYDELLEFLKIEDNLEKILTKFGDKIYEYELE
GLVEICGLKVRSRI

Nucleotide


Download         Length: 765 bp        

>NTDB_id=123186 CINS_RS04550 WP_039650244.1 870274..871038(-) (dprA) [Campylobacter insulaenigrae NCTC 12927]
ATGAAATTTATAAATAAAATTGAAGAATTTGATATTTTATCAAAATCACCAGATAAAATATATTACAAAGGAAATTTAGA
ACTTTTAAAAAAGAAAAAAATTGCTATTATTGGTTCTAGAAAAATGAGCATTTATACTAGAAATTGTATTTTTGAACTTG
CAAAATTATGTAAAAATGCAGGGATTTGTGTGGTAAGTGGAGGTGCTTTAGGAGTAGATATTGCTGCTGCTAATGCTGCT
TTTCCAAGTACAATAGCAGTGTTTGCCAATGGGCTTGATGAAATTTATCCAAAAAGCAATAAAAAATATATAGAGGCTAT
TTATCAAGAAGCTTTGGCATTGAGTGAGCATGATGGAAATTATAAACCAAAGCCATATGATTTTTTACTTAGAAATCGTC
TGATTGTAGCTCTAAGTGAAGTTGTTGTAATTGCCCAAGCTGACATCCAAAGTGGTTCCATGCAGAGTGCAAGACTTGCT
TTAGATATGAAAAAACCAGTATATGTTTTACCTCAAAGAATAAAAGAAAGCGAAGGAACCAATTTACTTTTATCTCAAAA
ACAAGCGAATTTGTTGCATGATTTTTCTCATTTTGTATCAAAATTTGGAGAACTAAACAAAGAACCTTATGATGAATTAT
TAGAATTTTTAAAAATAGAGGATAATTTAGAAAAAATTTTAACTAAATTTGGGGATAAGATTTATGAATATGAATTGGAG
GGTTTGGTGGAAATTTGCGGTTTAAAAGTAAGGTCTAGAATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8H1L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.039

90.945

0.555
  dprA Helicobacter pylori 26695

45.798

93.701

0.429

Multiple sequence alignment