Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CAQ16704_RS04690 Genome accession   NZ_CP007769
Coordinates   907288..908055 (-) Length   255 a.a.
NCBI ID   WP_039667103.1    Uniprot ID   A0A0A8GXK1
Organism   Campylobacter sp. RM16704     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 902288..913055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAQ16704_RS04665 (CAQ16704_0930) flhA 902777..904936 (-) 2160 WP_039667099.1 flagellar biosynthesis protein FlhA -
  CAQ16704_RS04670 (CAQ16704_0931) - 904929..905333 (-) 405 WP_039667100.1 Rrf2 family transcriptional regulator -
  CAQ16704_RS04675 (CAQ16704_0932) rpsO 905548..905820 (+) 273 WP_039667101.1 30S ribosomal protein S15 -
  CAQ16704_RS04680 (CAQ16704_0933) - 906025..906918 (-) 894 WP_052245004.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CAQ16704_RS04685 (CAQ16704_0934) ruvX 906905..907291 (-) 387 WP_039667102.1 Holliday junction resolvase RuvX -
  CAQ16704_RS04690 (CAQ16704_0935) dprA 907288..908055 (-) 768 WP_039667103.1 DNA-processing protein DprA Machinery gene
  CAQ16704_RS04695 (CAQ16704_0936) - 908042..909091 (-) 1050 WP_148308476.1 divergent polysaccharide deacetylase family protein -
  CAQ16704_RS04700 (CAQ16704_0937) ilvC 909093..910115 (-) 1023 WP_039667104.1 ketol-acid reductoisomerase -
  CAQ16704_RS04705 (CAQ16704_0938) - 910221..912161 (+) 1941 WP_039667105.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28709.31 Da        Isoelectric Point: 7.7500

>NTDB_id=123169 CAQ16704_RS04690 WP_039667103.1 907288..908055(-) (dprA) [Campylobacter sp. RM16704]
MKFIENIDGFEGLLDPPSRIYYKGNLELLSTRKVAIIGSRKMSIYTKNCIVELVSLLKKNNVCVVSGGALGVDIQAAKIA
YPQTIAVFANGLDEIYPKANTNDILNIYRNALALSENEPNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHNFEDFVSMFGTIHQDQKQDDLLNFLKYEDNLEKVLQKFGDRVYEYEL
EGLVEIFGVKIRACL

Nucleotide


Download         Length: 768 bp        

>NTDB_id=123169 CAQ16704_RS04690 WP_039667103.1 907288..908055(-) (dprA) [Campylobacter sp. RM16704]
ATGAAATTTATTGAAAACATTGATGGTTTTGAAGGTCTTTTAGATCCACCTTCTAGGATTTATTATAAAGGCAATCTAGA
GCTTTTAAGTACTAGAAAAGTTGCTATTATAGGCTCTAGAAAAATGAGCATTTATACTAAAAATTGTATTGTAGAACTAG
TATCTTTATTAAAAAAAAATAATGTTTGTGTAGTAAGTGGTGGAGCTTTAGGGGTAGATATTCAGGCAGCAAAAATTGCC
TATCCACAAACCATAGCTGTTTTTGCTAATGGACTTGATGAGATTTATCCAAAAGCTAACACTAATGATATTTTAAATAT
TTATAGAAATGCTTTAGCATTAAGTGAGAATGAGCCAAATTATAAAGCAAAACCTTATGATTTTTTACTAAGAAATAGAC
TTATTATAGCTTTAAGCGAAGTTGTTATAATAGCACAAGCGGATTTAAAAAGTGGATCTATGCAAAGTGCAAGACTTGCA
TTAGGTATGAATAAACCTATCTATGTTTTACCTCATAGAAAAAATGAAAGCGAAGGGACAAATTTGCTTTTAGCTACAAA
AAAAGCAAATTTAATTCATAATTTTGAAGATTTTGTAAGTATGTTTGGAACAATTCATCAAGATCAAAAACAAGATGATT
TATTAAATTTTTTAAAATACGAAGACAATCTAGAAAAGGTTTTACAAAAATTTGGTGATAGGGTTTATGAGTATGAGCTT
GAAGGTTTAGTAGAAATTTTTGGGGTAAAAATAAGGGCTTGTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8GXK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.914

90.98

0.545
  dprA Helicobacter pylori 26695

45.968

97.255

0.447

Multiple sequence alignment