Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJM129_RS03065 Genome accession   NZ_CP007749
Coordinates   584686..585459 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni subsp. jejuni M129     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 579686..590459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM129_RS03050 (CJM129_2920) - 580535..582469 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  CJM129_RS03055 (CJM129_2925) ilvC 582588..583610 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  CJM129_RS03060 (CJM129_2930) - 583614..584696 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  CJM129_RS03065 (CJM129_2935) dprA 584686..585459 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  CJM129_RS03070 (CJM129_2940) ruvX 585456..585839 (+) 384 WP_002870088.1 Holliday junction resolvase RuvX -
  CJM129_RS03075 (CJM129_2945) - 585868..586707 (+) 840 WP_079263627.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJM129_RS03080 (CJM129_2950) msrA 586883..587380 (-) 498 WP_002870090.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJM129_RS03085 (CJM129_2955) ppa 587421..587939 (-) 519 WP_002870091.1 inorganic diphosphatase -
  CJM129_RS03090 (CJM129_2960) adk 587949..588527 (-) 579 WP_002855137.1 adenylate kinase -
  CJM129_RS03095 (CJM129_2965) aspS 588524..590275 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=123074 CJM129_RS03065 WP_002868431.1 584686..585459(+) (dprA) [Campylobacter jejuni subsp. jejuni M129]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=123074 CJM129_RS03065 WP_002868431.1 584686..585459(+) (dprA) [Campylobacter jejuni subsp. jejuni M129]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment