Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DK65_RS06935 | Genome accession | NZ_CP007743 |
| Coordinates | 269572..270078 (+) | Length | 168 a.a. |
| NCBI ID | WP_002967690.1 | Uniprot ID | A0A7L9MC56 |
| Organism | Brucella pinnipedialis strain 6/566 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 264572..275078
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK65_RS06925 (DK65_266) | - | 265287..265562 (+) | 276 | WP_002964234.1 | HU family DNA-binding protein | - |
| DK65_RS06930 (DK65_267) | uvrA | 265749..268673 (-) | 2925 | WP_006168270.1 | excinuclease ABC subunit UvrA | - |
| DK65_RS16565 (DK65_268) | - | 268804..269004 (-) | 201 | WP_002964232.1 | hypothetical protein | - |
| DK65_RS06935 (DK65_270) | ssb | 269572..270078 (+) | 507 | WP_002967690.1 | single-stranded DNA-binding protein | Machinery gene |
| DK65_RS16570 (DK65_269) | - | 269982..270182 (-) | 201 | WP_002971429.1 | hypothetical protein | - |
| DK65_RS06940 (DK65_271) | - | 270234..270635 (-) | 402 | WP_002969546.1 | hypothetical protein | - |
| DK65_RS06945 (DK65_272) | phnF | 270778..271539 (-) | 762 | WP_004689719.1 | phosphonate metabolism transcriptional regulator PhnF | - |
| DK65_RS06950 (DK65_273) | phnN | 271726..272304 (+) | 579 | WP_004685664.1 | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | - |
| DK65_RS06955 (DK65_274) | - | 272395..273024 (-) | 630 | WP_006070834.1 | MarC family protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18371.15 Da Isoelectric Point: 5.3476
>NTDB_id=123028 DK65_RS06935 WP_002967690.1 269572..270078(+) (ssb) [Brucella pinnipedialis strain 6/566]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=123028 DK65_RS06935 WP_002967690.1 269572..270078(+) (ssb) [Brucella pinnipedialis strain 6/566]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.947 |
100 |
0.554 |
| ssb | Vibrio cholerae strain A1552 |
49.711 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
38.547 |
100 |
0.411 |
| ssb | Neisseria gonorrhoeae MS11 |
37.778 |
100 |
0.405 |