Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BMMGA3_RS08205 Genome accession   NZ_CP007739
Coordinates   1685406..1685732 (+) Length   108 a.a.
NCBI ID   WP_004434169.1    Uniprot ID   -
Organism   Bacillus methanolicus MGA3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680406..1690732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS08170 (BMMGA3_08470) - 1680463..1681626 (-) 1164 WP_004434148.1 acyl-CoA dehydrogenase family protein -
  BMMGA3_RS08175 (BMMGA3_08475) - 1681892..1682095 (+) 204 WP_004434151.1 DUF1657 domain-containing protein -
  BMMGA3_RS08180 (BMMGA3_08480) - 1682182..1682388 (+) 207 WP_004434153.1 DUF1657 domain-containing protein -
  BMMGA3_RS08185 (BMMGA3_08485) - 1682407..1683276 (+) 870 WP_004434156.1 DUF421 domain-containing protein -
  BMMGA3_RS08190 (BMMGA3_08490) - 1683455..1683793 (-) 339 WP_004434159.1 YrdB family protein -
  BMMGA3_RS08195 (BMMGA3_08495) - 1683826..1684407 (-) 582 WP_004434162.1 TetR/AcrR family transcriptional regulator -
  BMMGA3_RS08200 (BMMGA3_08500) - 1684486..1685196 (-) 711 WP_004434167.1 MBL fold metallo-hydrolase -
  BMMGA3_RS08205 (BMMGA3_08505) sinR 1685406..1685732 (+) 327 WP_004434169.1 helix-turn-helix domain-containing protein Regulator
  BMMGA3_RS17295 (BMMGA3_08510) - 1685861..1686010 (-) 150 WP_081848749.1 anti-repressor SinI family protein -
  BMMGA3_RS08210 (BMMGA3_08515) - 1686592..1687188 (-) 597 WP_004434174.1 CalY family protein -
  BMMGA3_RS08215 (BMMGA3_08520) sipW 1687272..1687862 (-) 591 WP_004434177.1 signal peptidase I SipW -
  BMMGA3_RS08220 (BMMGA3_08525) - 1687878..1688480 (-) 603 WP_185762543.1 SipW-dependent-type signal peptide-containing protein -
  BMMGA3_RS08225 (BMMGA3_08530) - 1689151..1689624 (-) 474 WP_004434184.1 DUF6884 domain-containing protein -
  BMMGA3_RS08230 (BMMGA3_08535) - 1689694..1690242 (-) 549 WP_004434188.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  BMMGA3_RS08235 (BMMGA3_08540) - 1690294..1690590 (-) 297 Protein_1649 Ada metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12654.62 Da        Isoelectric Point: 5.9371

>NTDB_id=122998 BMMGA3_RS08205 WP_004434169.1 1685406..1685732(+) (sinR) [Bacillus methanolicus MGA3]
MIGDRVKKLRLEKQMSLSELAEQAGVAKSYLSALERNLQRNPSIQFLEKIAGVLNVPIDHLILEQPNKEDLDSEWMKIVK
EAMESGVSKEQFREFLEFYKWKMNQNKE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=122998 BMMGA3_RS08205 WP_004434169.1 1685406..1685732(+) (sinR) [Bacillus methanolicus MGA3]
ATGATTGGTGATCGTGTAAAAAAACTCCGCCTAGAAAAGCAAATGTCCCTCTCAGAATTGGCAGAGCAGGCCGGTGTAGC
AAAATCATATTTAAGCGCCTTAGAAAGAAATTTACAAAGAAACCCATCCATACAGTTTCTTGAAAAAATTGCAGGAGTAT
TAAACGTTCCTATTGATCATTTGATTCTCGAACAACCTAACAAAGAGGATTTGGATTCAGAATGGATGAAAATTGTCAAA
GAAGCGATGGAATCTGGAGTTTCTAAAGAACAATTTCGCGAATTCCTTGAATTTTATAAATGGAAAATGAATCAAAATAA
AGAATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

61.261

100

0.63

Multiple sequence alignment