Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC36_RS02520 Genome accession   NZ_CP010489
Coordinates   448531..449184 (-) Length   217 a.a.
NCBI ID   WP_059111151.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC530     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 443531..454184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC36_RS02475 (RC36_02480) - 444172..444915 (-) 744 WP_048818566.1 phage regulatory protein/antirepressor Ant -
  RC36_RS02480 (RC36_02485) - 444912..445094 (-) 183 WP_002900944.1 hypothetical protein -
  RC36_RS02485 (RC36_02490) - 445239..445454 (+) 216 WP_048818567.1 hypothetical protein -
  RC36_RS09015 - 445424..445588 (-) 165 WP_194717242.1 hypothetical protein -
  RC36_RS02490 (RC36_02495) - 445585..445839 (-) 255 WP_048818568.1 hypothetical protein -
  RC36_RS02495 (RC36_02500) - 445830..446099 (-) 270 WP_002783984.1 hypothetical protein -
  RC36_RS02500 (RC36_02505) - 446456..446728 (-) 273 WP_059111120.1 hypothetical protein -
  RC36_RS02505 (RC36_02510) - 446908..447678 (+) 771 WP_059111121.1 sel1 repeat family protein -
  RC36_RS02510 (RC36_02515) - 447682..447957 (-) 276 WP_004296768.1 hypothetical protein -
  RC36_RS02515 (RC36_02520) - 447944..448450 (-) 507 WP_059111122.1 Panacea domain-containing protein -
  RC36_RS02520 (RC36_02525) CJE0566 448531..449184 (-) 654 WP_059111151.1 DNA/RNA non-specific endonuclease Regulator
  RC36_RS02525 (RC36_02530) - 449204..449977 (-) 774 WP_002929400.1 hypothetical protein -
  RC36_RS02530 (RC36_02535) - 449974..450705 (-) 732 WP_002929403.1 S24 family peptidase -
  RC36_RS02535 (RC36_02540) - 450846..451061 (+) 216 WP_002925661.1 hypothetical protein -
  RC36_RS08800 - 451157..451456 (+) 300 WP_002861657.1 hypothetical protein -
  RC36_RS02545 (RC36_02550) - 451453..452454 (+) 1002 WP_059111123.1 hypothetical protein -
  RC36_RS02550 (RC36_02555) - 452465..453115 (+) 651 WP_002861659.1 hypothetical protein -
  RC36_RS02555 (RC36_02560) - 453133..453513 (+) 381 WP_002861660.1 hypothetical protein -
  RC36_RS02560 (RC36_02565) - 453513..453899 (+) 387 WP_002826748.1 terminase small subunit -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25586.14 Da        Isoelectric Point: 9.8271

>NTDB_id=122886 RC36_RS02520 WP_059111151.1 448531..449184(-) (CJE0566) [Campylobacter jejuni strain CJ677CC530]
MKKLILLPLLSTLAFADYTQYKPSEDFAKYFTKQNCSQVLDKFYYLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDSNPQRIKNQIAIPNSYTKILKGDNFKECYQVPNHEVEDENIKKYKVNCDKI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=122886 RC36_RS02520 WP_059111151.1 448531..449184(-) (CJE0566) [Campylobacter jejuni strain CJ677CC530]
GTGAAAAAACTCATACTTTTGCCATTGTTATCCACTCTAGCTTTTGCTGATTACACACAATATAAACCGAGTGAAGATTT
TGCAAAGTATTTTACTAAACAAAACTGCTCTCAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAATTAGAAGCGGAAAATTTAAAAGGCGAACAAATTAAAAAACGCCCACGATTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAACTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAAAAATCAAATTGCTATTCCAAACTCTTACACTAAGATTTTAAA
AGGCGATAATTTTAAAGAATGTTACCAAGTGCCAAATCATGAAGTAGAAGATGAGAATATAAAAAAATATAAGGTTAATT
GTGATAAAATATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

93.088

100

0.931
  CJE1441 Campylobacter jejuni RM1221

92.093

99.078

0.912