Detailed information NTG0122833

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RR41_RS20175
• Genome accession: NZ_CP007712
• Coordinates: 3611995..3612855 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii LAC-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3606995..3617855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RR41_RS17330 (ABLAC_34560)	secG	3607600..3607929 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
RR41_RS17335 (ABLAC_34570)	tpiA	3607942..3608736 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
RR41_RS17340 (ABLAC_34580)	pilB	3609027..3610739 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RR41_RS17345 (ABLAC_34590)	pilC	3610769..3611995 (+)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
RR41_RS20175 (ABLAC_34600)	pilD	3611995..3612855 (+)	861	WP_001152269.1	A24 family peptidase	Machinery gene
RR41_RS17355 (ABLAC_34610)	coaE	3612857..3613453 (+)	597	WP_000874124.1	dephospho-CoA kinase	-
RR41_RS17360 (ABLAC_34620)	-	3613450..3614364 (-)	915	WP_000075015.1	DMT family transporter	-
RR41_RS17365 (ABLAC_34630)	rlmB	3614399..3615148 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RR41_RS17370 (ABLAC_34640)	-	3615250..3615576 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RR41_RS17375 (ABLAC_34650)	-	3615653..3616963 (-)	1311	WP_000753286.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=122833 RR41_RS20175 WP_001152269.1 3611995..3612855(+) (pilD) [Acinetobacter baumannii LAC-4]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=122833 RR41_RS20175 WP_001152269.1 3611995..3612855(+) (pilD) [Acinetobacter baumannii LAC-4]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCATCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437