Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC17_RS02570 Genome accession   NZ_CP010475
Coordinates   457310..457963 (-) Length   217 a.a.
NCBI ID   WP_059119152.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC073     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 452310..462963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC17_RS02535 (RC17_02530) - 453120..453974 (-) 855 WP_022552237.1 lambda-exonuclease family protein -
  RC17_RS02540 (RC17_02535) - 453976..454203 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  RC17_RS02545 (RC17_02540) - 454194..454451 (-) 258 WP_002865124.1 hypothetical protein -
  RC17_RS02550 (RC17_02545) - 454442..454711 (-) 270 WP_002874357.1 hypothetical protein -
  RC17_RS02555 (RC17_02550) - 455274..455546 (-) 273 WP_059119150.1 hypothetical protein -
  RC17_RS02560 (RC17_02555) - 455725..456495 (+) 771 WP_059119151.1 SEL1-like repeat protein -
  RC17_RS02565 (RC17_02560) - 456496..457323 (-) 828 WP_002875053.1 hypothetical protein -
  RC17_RS02570 (RC17_02565) CJE0566 457310..457963 (-) 654 WP_059119152.1 DNA/RNA non-specific endonuclease Regulator
  RC17_RS02575 (RC17_02570) - 457979..458482 (-) 504 WP_002865051.1 hypothetical protein -
  RC17_RS02580 (RC17_02575) - 458469..459674 (-) 1206 WP_059119153.1 AAA family ATPase -
  RC17_RS02585 (RC17_02580) - 459777..460508 (-) 732 WP_059119154.1 S24 family peptidase -
  RC17_RS02590 (RC17_02585) - 460649..460864 (+) 216 WP_002875060.1 hypothetical protein -
  RC17_RS02595 (RC17_02590) - 460851..461285 (+) 435 WP_044258295.1 hypothetical protein -
  RC17_RS02600 (RC17_02595) - 461282..461659 (+) 378 WP_052789488.1 hypothetical protein -
  RC17_RS02605 (RC17_02600) - 461656..462657 (+) 1002 WP_052783285.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25474.01 Da        Isoelectric Point: 9.8861

>NTDB_id=122285 RC17_RS02570 WP_059119152.1 457310..457963(-) (CJE0566) [Campylobacter jejuni strain CJ677CC073]
MKKLIILSLLTTLALADYSQYKPSEDFAKHFTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSSYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEDESIKKYKVNCGKF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=122285 RC17_RS02570 WP_059119152.1 457310..457963(-) (CJE0566) [Campylobacter jejuni strain CJ677CC073]
ATGAAAAAACTTATAATCTTATCATTATTGACAACTCTAGCCTTAGCTGATTATAGCCAATACAAACCAAGTGAAGATTT
TGCTAAGCATTTTACTAAGCAAAACTGCTCACAAGTTTTGGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAACAGCAGTTATGATAGAGGGCACACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCACAAAATCCAC
AAATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGTAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGATAATTTTAAAGAATGTTACCAAGTACCAAATCATGAAGTTGAAGATGAGAGTATAAAAAAATATAAGGTTAATT
GTGGCAAATTTTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

89.401

100

0.894
  CJE1441 Campylobacter jejuni RM1221

89.401

100

0.894

Multiple sequence alignment