Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   M0579_RS15620 Genome accession   NZ_CP007668
Coordinates   1027164..1027628 (-) Length   154 a.a.
NCBI ID   WP_162467464.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1022164..1032628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS05030 (M0579_00933) - 1022667..1024685 (-) 2019 WP_002218503.1 OPT family oligopeptide transporter -
  M0579_RS05035 (M0579_00934) dnaJ 1024881..1026002 (-) 1122 WP_002218502.1 molecular chaperone DnaJ -
  M0579_RS15425 - 1026369..1026530 (-) 162 WP_153309621.1 hypothetical protein -
  M0579_RS15430 - 1026520..1026765 (-) 246 WP_021439204.1 hypothetical protein -
  M0579_RS15620 comE 1027164..1027628 (-) 465 WP_162467464.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16464.73 Da        Isoelectric Point: 10.9585

>NTDB_id=122264 M0579_RS15620 WP_162467464.1 1027164..1027628(-) (comE) [Neisseria meningitidis M0579]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=122264 M0579_RS15620 WP_162467464.1 1027164..1027628(-) (comE) [Neisseria meningitidis M0579]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment