Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilN   Type   Machinery gene
Locus tag   M0579_RS07375 Genome accession   NZ_CP007668
Coordinates   1477775..1478374 (-) Length   199 a.a.
NCBI ID   WP_002214520.1    Uniprot ID   Q4W563
Organism   Neisseria meningitidis M0579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1472775..1483374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS07360 (M0579_01361) pilQ 1474260..1476545 (-) 2286 WP_002224059.1 type IV pilus secretin PilQ Machinery gene
  M0579_RS07365 (M0579_01362) pilP 1476564..1477109 (-) 546 WP_002224058.1 pilus assembly protein PilP Machinery gene
  M0579_RS07370 (M0579_01363) - 1477127..1477774 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  M0579_RS07375 (M0579_01364) pilN 1477775..1478374 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  M0579_RS07380 pilM 1478377..1479493 (-) 1117 Protein_1372 type IV pilus biogenesis protein PilM -
  M0579_RS07385 (M0579_01366) - 1479645..1482040 (+) 2396 Protein_1373 penicillin-binding protein 1A -
  M0579_RS07390 (M0579_01367) yihA 1482161..1482790 (-) 630 WP_002217904.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence


Protein


Download         Length: 199 a.a.        Molecular weight: 22257.48 Da        Isoelectric Point: 9.5493

>NTDB_id=122243 M0579_RS07375 WP_002214520.1 1477775..1478374(-) (pilN) [Neisseria meningitidis M0579]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=122243 M0579_RS07375 WP_002214520.1 1477775..1478374(-) (pilN) [Neisseria meningitidis M0579]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains


Predicted by InterproScan.

(104-177)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q4W563

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

100

100

1


Multiple sequence alignment