Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   M0579_RS07365 Genome accession   NZ_CP007668
Coordinates   1476564..1477109 (-) Length   181 a.a.
NCBI ID   WP_002224058.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1471564..1482109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS07355 (M0579_01360) - 1472687..1473199 (-) 513 WP_002222978.1 shikimate kinase -
  M0579_RS07360 (M0579_01361) pilQ 1474260..1476545 (-) 2286 WP_002224059.1 type IV pilus secretin PilQ Machinery gene
  M0579_RS07365 (M0579_01362) pilP 1476564..1477109 (-) 546 WP_002224058.1 pilus assembly protein PilP Machinery gene
  M0579_RS07370 (M0579_01363) - 1477127..1477774 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  M0579_RS07375 (M0579_01364) pilN 1477775..1478374 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  M0579_RS07380 pilM 1478377..1479493 (-) 1117 Protein_1372 type IV pilus biogenesis protein PilM -
  M0579_RS07385 (M0579_01366) - 1479645..1482040 (+) 2396 Protein_1373 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19995.49 Da        Isoelectric Point: 4.7452

>NTDB_id=122242 M0579_RS07365 WP_002224058.1 1476564..1477109(-) (pilP) [Neisseria meningitidis M0579]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGGNAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=122242 M0579_RS07365 WP_002224058.1 1476564..1477109(-) (pilP) [Neisseria meningitidis M0579]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGGAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

99.448

100

0.994

Multiple sequence alignment