Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   B6116_RS10595 Genome accession   NZ_CP007667
Coordinates   2038027..2038491 (-) Length   154 a.a.
NCBI ID   WP_011798742.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033027..2043491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS10570 (B6116_01970) - 2034311..2034583 (-) 273 WP_002212673.1 ACT domain-containing protein -
  B6116_RS10575 (B6116_01971) - 2034709..2035446 (-) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  B6116_RS10580 (B6116_01972) prmB 2035727..2036626 (-) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  B6116_RS10585 (B6116_01973) - 2036771..2037364 (+) 594 WP_002226163.1 hypothetical protein -
  B6116_RS10590 (B6116_01974) - 2037476..2037913 (+) 438 Protein_1997 HK97 family phage prohead protease -
  B6116_RS10595 comE 2038027..2038491 (-) 465 WP_011798742.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16605.84 Da        Isoelectric Point: 10.8773

>NTDB_id=122214 B6116_RS10595 WP_011798742.1 2038027..2038491(-) (comE) [Neisseria meningitidis strain B6116/77]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=122214 B6116_RS10595 WP_011798742.1 2038027..2038491(-) (comE) [Neisseria meningitidis strain B6116/77]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment