Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   B6116_RS03635 Genome accession   NZ_CP007667
Coordinates   694880..695578 (+) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis strain B6116/77     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689880..700578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS03615 (B6116_00680) trpC 691202..691984 (-) 783 WP_002236649.1 indole-3-glycerol phosphate synthase TrpC -
  B6116_RS03620 (B6116_00681) - 692035..692991 (-) 957 WP_002226011.1 YheT family hydrolase -
  B6116_RS03625 (B6116_00682) murJ 693124..694662 (-) 1539 WP_002226012.1 murein biosynthesis integral membrane protein MurJ -
  B6116_RS03630 - 694662..694853 (-) 192 WP_002260368.1 hypothetical protein -
  B6116_RS03635 (B6116_00683) dsbA1 694880..695578 (+) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  B6116_RS03640 (B6116_00684) amgK 695635..696639 (-) 1005 WP_002221934.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  B6116_RS03645 (B6116_00685) - 696709..699117 (+) 2409 WP_002244398.1 LPS-assembly protein LptD -
  B6116_RS03650 (B6116_00686) - 699222..700328 (+) 1107 WP_047957319.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=122189 B6116_RS03635 WP_002224844.1 694880..695578(+) (dsbA1) [Neisseria meningitidis strain B6116/77]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=122189 B6116_RS03635 WP_002224844.1 694880..695578(+) (dsbA1) [Neisseria meningitidis strain B6116/77]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment