Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MA06_RS20840 Genome accession   NZ_CP007626
Coordinates   3720193..3722019 (+) Length   608 a.a.
NCBI ID   WP_040119303.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3715193..3727019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS20820 (DJ92_3806) - 3715467..3716138 (-) 672 WP_018764011.1 TerC family protein -
  MA06_RS20825 (DJ92_3807) mecA 3716505..3717182 (+) 678 WP_003195931.1 adaptor protein MecA Regulator
  MA06_RS20830 (DJ92_3808) cls 3717266..3718810 (+) 1545 WP_018781154.1 cardiolipin synthase -
  MA06_RS20835 (DJ92_3809) - 3718905..3720146 (+) 1242 WP_018781153.1 competence protein CoiA family protein -
  MA06_RS20840 (DJ92_3810) pepF 3720193..3722019 (+) 1827 WP_040119303.1 oligoendopeptidase F Regulator
  MA06_RS31235 (DJ92_3811) - 3722067..3722240 (-) 174 WP_006093954.1 hypothetical protein -
  MA06_RS20845 (DJ92_3812) - 3722470..3723363 (-) 894 WP_006093953.1 ClpXP adapter SpxH family protein -
  MA06_RS20850 (DJ92_3813) - 3723363..3723761 (-) 399 WP_003195936.1 globin -
  MA06_RS20855 (DJ92_3814) - 3724083..3724661 (-) 579 WP_006093952.1 CYTH domain-containing protein -
  MA06_RS20860 (DJ92_3815) - 3724806..3725177 (+) 372 WP_018781151.1 hypothetical protein -
  MA06_RS20865 (DJ92_3816) - 3725208..3725846 (+) 639 WP_016113795.1 GTP pyrophosphokinase family protein -
  MA06_RS20870 (DJ92_3817) - 3725865..3726662 (+) 798 WP_003195940.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70266.66 Da        Isoelectric Point: 4.7483

>NTDB_id=121787 MA06_RS20840 WP_040119303.1 3720193..3722019(+) (pepF) [Bacillus pseudomycoides strain 219298]
MSNQKTAKTLPDRSEIEEMNTWRLEDVFQTDEEWEKEFQAVKELLPKLTEFKGKLGDSADSLLAALQYEDEVSMRLGKLY
TYAHMRYDQDTTNSAYQALNDRATNLYSQASSSMAYIVPEILTISEEQLQSFLQENKELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDRRVRHDAFHAVFETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPETVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQEILLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEAILNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQAMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKRYFGDALVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEGK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=121787 MA06_RS20840 WP_040119303.1 3720193..3722019(+) (pepF) [Bacillus pseudomycoides strain 219298]
ATGTCTAATCAAAAAACAGCAAAAACATTGCCAGACCGCAGTGAGATTGAAGAAATGAACACATGGCGTTTGGAAGATGT
TTTCCAAACTGATGAAGAATGGGAAAAAGAATTTCAAGCAGTAAAAGAATTACTACCAAAGTTAACTGAATTTAAGGGGA
AACTTGGTGATTCTGCGGATTCATTATTAGCGGCTTTACAATATGAAGATGAAGTCTCAATGAGATTAGGAAAATTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAATTCTGCTTATCAAGCGCTAAATGATCGAGCAACAAACTTATA
TTCTCAAGCGTCCAGCAGCATGGCGTATATCGTTCCTGAAATTTTAACAATTTCAGAAGAACAATTACAGTCGTTCTTAC
AAGAAAATAAAGAATTAAGTGTGTATGAACATGCGTTAGAAGAAATTACACGTCAGCGTCCGCATGTACTGTCAGAGGCG
GAAGAAGCATTGTTAGCAGAAGCATCTGAAGTTATGAGTGCATCAAGTAATACATTTGGTATGCTTAATAATGCGGATTT
AAAATTCCCATCTATTAAAGATGAAAATGGTGAAGAAGTAGAAGTAACACATGGCCGTTATATTCAATTTTTAGAAAGCG
ATGATCGTCGTGTTCGTCATGATGCATTCCATGCTGTTTTTGAAACGTATGGGAAATATAAAAATACATTTGCAAGCACA
CTTAGTGGTGCAGTGAAACGTAATAATTTCAACGCGCGCGTTCGTAAATACGATTCTGCACGCCAAGCTGCGTTAAGCAA
TAATAACATACCTGAAACAGTATATGACCAACTTGTCGAAACAGTAAATGATAACTTACATTTATTGCACCGTTATATTG
ATATTCGTAAACGTGCACTAGGTCTTGATGAACTGCATATGTACGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAGGCACAAGAGATTCTGTTGAAATCTTTAAACGTCCTTGGTGATGAGTATGTTGAGATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAAAACAAAGGAAAACGAAGCGGTGCGTATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCACATGAGTTTGGTCATTCT
GTGCATAGCTACTATACAAGAAAAACACAGCCACATGTATATGGTGACTATTCCATATTCGTTGCGGAAGTTGCATCAAC
TTGTAACGAAGCAATTTTAAATGATTACTTATTAAAAACGACAGAAGATAAGAAAGAACGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGAACTGTATTCCGTCAAGCGATGTTTGCTGAATTTGAACATATCATTCATAAAAAGGTACAA
GAAGGCCATGCAGTAACGCCAGATATGTTAACAGAGATTTACTATGATTTAAATAAAAGATACTTTGGCGATGCTTTAGT
CATCGATAAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTATGTTTATCAATATGCAACAG
GATTTAGTGCGGCAACAGCCTTATCAAAGCAAATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAATTC
TTAAAAGCTGGAAGCTCCGACTATCCAATTGAAGTATTGAAAAAAGCAGGAGTAGATATGGCATCACCAGAGCCTGTTAA
AGAGGCATTACAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCGCTATTATTTGAAGGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.329

98.026

0.484

Multiple sequence alignment