Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | MA06_RS15380 | Genome accession | NZ_CP007626 |
| Coordinates | 2564435..2566870 (+) | Length | 811 a.a. |
| NCBI ID | WP_006093090.1 | Uniprot ID | - |
| Organism | Bacillus pseudomycoides strain 219298 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2559435..2571870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MA06_RS15365 (DJ92_2686) | - | 2562185..2562646 (+) | 462 | WP_006093087.1 | CtsR family transcriptional regulator | - |
| MA06_RS15370 (DJ92_2687) | - | 2562795..2563343 (+) | 549 | WP_006093088.1 | UvrB/UvrC motif-containing protein | - |
| MA06_RS15375 (DJ92_2688) | - | 2563348..2564412 (+) | 1065 | WP_006093089.1 | protein arginine kinase | - |
| MA06_RS15380 (DJ92_2689) | clpC | 2564435..2566870 (+) | 2436 | WP_006093090.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| MA06_RS15385 (DJ92_2690) | radA | 2566965..2568341 (+) | 1377 | WP_003194303.1 | DNA repair protein RadA | Machinery gene |
| MA06_RS15390 (DJ92_2691) | disA | 2568345..2569418 (+) | 1074 | WP_003194305.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| MA06_RS15395 (DJ92_2692) | - | 2569579..2570697 (+) | 1119 | WP_003194307.1 | PIN/TRAM domain-containing protein | - |
| MA06_RS15400 (DJ92_2693) | ispD | 2570714..2571394 (+) | 681 | WP_006093092.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90612.54 Da Isoelectric Point: 6.3069
>NTDB_id=121772 MA06_RS15380 WP_006093090.1 2564435..2566870(+) (clpC) [Bacillus pseudomycoides strain 219298]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEMSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQGGASANAN
TPTLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLEESIQILRGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPDLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELELTSTAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVVFDAEGE
SFVIRSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEMSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEATSGHQGGASANAN
TPTLDSLARDLTVVAREGRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLEESIQILRGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPDLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETNKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELELTSTAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVVFDAEGE
SFVIRSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=121772 MA06_RS15380 WP_006093090.1 2564435..2566870(+) (clpC) [Bacillus pseudomycoides strain 219298]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAAGAAGCAATTCGCATTGGGCATAA
TAATATTGGTACAGAACATATTTTACTTGGGCTTGTACGCGAAGGGGAAGGAATTGCAGCTAAAGCGTTAATTGCTCTTG
GGCTAAGTCCAGAGAAGGTACAAAAAGAGGTAGAGGCATTAATTGGTCGTGGAACAGAGATGTCTCAAACTGTTCATTAT
ACACCGCGTGCCAAAAAAGTAATTGAGTTATCAATGGATGAGGCACGTAAGCTAGGTCATTCTTATGTTGGAACGGAACA
TATTTTACTAGGATTGATCCGTGAAGGTGAAGGTGTTGCAGCGCGTGTTTTAAATAACTTAGGCGTAAGTTTAAACAAAG
CAAGACAACAAGTATTGCAGCTCCTTGGAAGCAATGAAGCTACATCAGGCCATCAAGGTGGTGCATCAGCAAATGCAAAT
ACACCAACGCTTGATAGTTTAGCGCGAGATTTGACAGTTGTTGCACGTGAAGGACGCTTAGATCCTGTTATTGGCCGTAG
TAAAGAGATTCAACGTGTTATTGAAGTATTGAGCCGTAGAACTAAGAATAACCCAGTATTAATTGGAGAACCTGGGGTAG
GTAAAACAGCAATTGCTGAAGGTCTAGCACAGCAAATTGTAAATAATGAAGTTCCAGAAACATTACGCGATAAGCGTGTT
ATGACGTTAGATATGGGTACAGTTGTTGCTGGCACGAAATACCGTGGTGAGTTTGAGGATCGTTTAAAGAAAGTGATGGA
TGAAATTCGCCAAGCTGGTAATATCATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGTGCAGAAGGTG
CAATTGACGCATCCAATATTTTGAAACCATCATTAGCACGTGGTGAATTGCAATGTATTGGGGCGACAACATTAGATGAG
TATCGTAAATACATTGAAAAAGATGCAGCACTAGAAAGACGTTTCCAACCAATTCATGTTGACGAGCCAAGCTTAGAAGA
ATCGATTCAAATTTTAAGAGGGTTACGCGATCGTTACGAGGCGCATCACCGCGTTTCCATTACAGATGATGCAATTGAAG
CAGCTGTAAAACTTTCGGATCGTTATATTACAGATCGTTTCTTACCTGATAAAGCAATTGACTTAATCGATGAAGCAGCT
TCAAAAGTACGCTTACGTTCTTATACAACACCACCAGATTTAAAAGAACTTGAAGTGAAACTTGAAGAAATTCGAAAAGA
AAAGGATGCAGCCGTACAGAGCCAAGAATTTGAAAAGGCAGCTTCTTTACGAGATATGGAACAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAGCAGCAAGGAAAAGAAAATTCAGAAGTAACAGTAGAAGACATTGCAAATGTT
GTTTCTACGTGGACGCGTATTCCGGTTTCTAAACTTGCACAAACAGAAACAAATAAATTATTGAATCTAGAATCCATTTT
ACATGACCGTGTAATTGGCCAAGATGAAGCTGTTGTCGCAGTAGCGAAAGCAGTGCGCCGCGCAAGAGCGGGTTTAAAAG
ATCCGAAACGCCCAATTGGTTCATTTATTTTCTTAGGACCGACTGGTGTAGGTAAAACGGAGCTTGCGCGTGCATTAGCA
GAATCTATGTTTGGTGATGAAGATGCAATGATTCGTATTGATATGTCTGAGTATATGGAGAAACATTCTACTTCTCGCTT
AGTGGGGTCTCCCCCAGGATATGTGGGATATGAAGAAGGCGGCCAATTAACAGAAAAAGTTCGTCGCAAACCATATTCTG
TCGTGCTGTTAGATGAAGTAGAGAAGGCACATCCAGATGTATTTAACATTTTACTGCAAGTGCTAGAAGATGGGCGTTTA
ACAGACTCTAAAGGGCGTACAGTTGATTTCCGAAATACAATTGTTATTATGACATCTAACGTTGGTGCCGAAGCATTAAA
ACGTAATAAACATCTCGGTTTTAACGTACAAGATGAGAGTCGTGATTATTCAGATATGAAGGGTAAAGTAATGGATGAAT
TGAAAAAAGCATTTCGTCCAGAGTTCTTAAACCGTATTGATGAAATCATTGTTTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTAACGCTTATGGTTAATCAATTAGTAAATCGGTTAAAAGAACAAGAGATTGAATTAGAGTTAACAAGTAC
AGCAATTGAAGCGATTGCTGATAAAGGATTCGATCGTGAGTATGGTGCTCGTCCACTTCGTCGAGCAATCCAAAAACATG
TGGAAGATCGATTGTCAGAAGAACTTCTAAAAGGAGCAATTGAGAAAGGTCAAAAAGTTGTCTTTGACGCCGAAGGGGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAAGAAGCAATTCGCATTGGGCATAA
TAATATTGGTACAGAACATATTTTACTTGGGCTTGTACGCGAAGGGGAAGGAATTGCAGCTAAAGCGTTAATTGCTCTTG
GGCTAAGTCCAGAGAAGGTACAAAAAGAGGTAGAGGCATTAATTGGTCGTGGAACAGAGATGTCTCAAACTGTTCATTAT
ACACCGCGTGCCAAAAAAGTAATTGAGTTATCAATGGATGAGGCACGTAAGCTAGGTCATTCTTATGTTGGAACGGAACA
TATTTTACTAGGATTGATCCGTGAAGGTGAAGGTGTTGCAGCGCGTGTTTTAAATAACTTAGGCGTAAGTTTAAACAAAG
CAAGACAACAAGTATTGCAGCTCCTTGGAAGCAATGAAGCTACATCAGGCCATCAAGGTGGTGCATCAGCAAATGCAAAT
ACACCAACGCTTGATAGTTTAGCGCGAGATTTGACAGTTGTTGCACGTGAAGGACGCTTAGATCCTGTTATTGGCCGTAG
TAAAGAGATTCAACGTGTTATTGAAGTATTGAGCCGTAGAACTAAGAATAACCCAGTATTAATTGGAGAACCTGGGGTAG
GTAAAACAGCAATTGCTGAAGGTCTAGCACAGCAAATTGTAAATAATGAAGTTCCAGAAACATTACGCGATAAGCGTGTT
ATGACGTTAGATATGGGTACAGTTGTTGCTGGCACGAAATACCGTGGTGAGTTTGAGGATCGTTTAAAGAAAGTGATGGA
TGAAATTCGCCAAGCTGGTAATATCATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGTGCAGAAGGTG
CAATTGACGCATCCAATATTTTGAAACCATCATTAGCACGTGGTGAATTGCAATGTATTGGGGCGACAACATTAGATGAG
TATCGTAAATACATTGAAAAAGATGCAGCACTAGAAAGACGTTTCCAACCAATTCATGTTGACGAGCCAAGCTTAGAAGA
ATCGATTCAAATTTTAAGAGGGTTACGCGATCGTTACGAGGCGCATCACCGCGTTTCCATTACAGATGATGCAATTGAAG
CAGCTGTAAAACTTTCGGATCGTTATATTACAGATCGTTTCTTACCTGATAAAGCAATTGACTTAATCGATGAAGCAGCT
TCAAAAGTACGCTTACGTTCTTATACAACACCACCAGATTTAAAAGAACTTGAAGTGAAACTTGAAGAAATTCGAAAAGA
AAAGGATGCAGCCGTACAGAGCCAAGAATTTGAAAAGGCAGCTTCTTTACGAGATATGGAACAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAGCAGCAAGGAAAAGAAAATTCAGAAGTAACAGTAGAAGACATTGCAAATGTT
GTTTCTACGTGGACGCGTATTCCGGTTTCTAAACTTGCACAAACAGAAACAAATAAATTATTGAATCTAGAATCCATTTT
ACATGACCGTGTAATTGGCCAAGATGAAGCTGTTGTCGCAGTAGCGAAAGCAGTGCGCCGCGCAAGAGCGGGTTTAAAAG
ATCCGAAACGCCCAATTGGTTCATTTATTTTCTTAGGACCGACTGGTGTAGGTAAAACGGAGCTTGCGCGTGCATTAGCA
GAATCTATGTTTGGTGATGAAGATGCAATGATTCGTATTGATATGTCTGAGTATATGGAGAAACATTCTACTTCTCGCTT
AGTGGGGTCTCCCCCAGGATATGTGGGATATGAAGAAGGCGGCCAATTAACAGAAAAAGTTCGTCGCAAACCATATTCTG
TCGTGCTGTTAGATGAAGTAGAGAAGGCACATCCAGATGTATTTAACATTTTACTGCAAGTGCTAGAAGATGGGCGTTTA
ACAGACTCTAAAGGGCGTACAGTTGATTTCCGAAATACAATTGTTATTATGACATCTAACGTTGGTGCCGAAGCATTAAA
ACGTAATAAACATCTCGGTTTTAACGTACAAGATGAGAGTCGTGATTATTCAGATATGAAGGGTAAAGTAATGGATGAAT
TGAAAAAAGCATTTCGTCCAGAGTTCTTAAACCGTATTGATGAAATCATTGTTTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTAACGCTTATGGTTAATCAATTAGTAAATCGGTTAAAAGAACAAGAGATTGAATTAGAGTTAACAAGTAC
AGCAATTGAAGCGATTGCTGATAAAGGATTCGATCGTGAGTATGGTGCTCGTCCACTTCGTCGAGCAATCCAAAAACATG
TGGAAGATCGATTGTCAGAAGAACTTCTAAAAGGAGCAATTGAGAAAGGTCAAAAAGTTGTCTTTGACGCCGAAGGGGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
86.173 |
99.877 |
0.861 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.062 |
100 |
0.501 |
| clpC | Streptococcus thermophilus LMD-9 |
46.57 |
100 |
0.477 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.08 |
100 |
0.471 |
| clpC | Streptococcus mutans UA159 |
45.258 |
100 |
0.465 |
| clpC | Streptococcus pneumoniae D39 |
47.177 |
98.274 |
0.464 |
| clpC | Streptococcus pneumoniae Rx1 |
47.177 |
98.274 |
0.464 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.875 |
98.644 |
0.462 |
| clpE | Streptococcus mutans UA159 |
53.846 |
80.148 |
0.432 |
| clpE | Streptococcus pneumoniae R6 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae Rx1 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae D39 |
53.168 |
79.778 |
0.424 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.598 |
78.298 |
0.412 |