Detailed information NTG0121763

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: MA06_RS13170
• Genome accession: NZ_CP007626
• Coordinates: 2112050..2113396 (-)
• Length: 448 a.a.
• NCBI ID: WP_040119064.1
• Uniprot ID: -
• Organism: Bacillus pseudomycoides strain 219298
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2107050..2118396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MA06_RS13150 (DJ92_2243)	raiA	2109818..2110360 (-)	543	WP_003201824.1	ribosome-associated translation inhibitor RaiA	-
MA06_RS13160 (DJ92_2244)	cspC	2111022..2111219 (-)	198	WP_001162040.1	cold shock protein CspC	-
MA06_RS13165 (DJ92_2245)	-	2111346..2112050 (-)	705	WP_042511394.1	ComF family protein	-
MA06_RS13170 (DJ92_2246)	comFA	2112050..2113396 (-)	1347	WP_040119064.1	DEAD/DEAH box helicase	Machinery gene
MA06_RS13175 (DJ92_2247)	-	2113729..2115027 (-)	1299	WP_040119065.1	C40 family peptidase	-
MA06_RS13180 (DJ92_2248)	-	2115304..2115618 (-)	315	WP_016112543.1	helix-turn-helix domain-containing protein	-
MA06_RS13185 (DJ92_2249)	-	2115999..2116841 (-)	843	WP_006096565.1	DegV family protein	-
MA06_RS13190 (DJ92_2250)	-	2117082..2117723 (+)	642	WP_003202049.1	YigZ family protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 51457.89 Da
• Isoelectric Point: 9.5538

>NTDB_id=121763 MA06_RS13170 WP_040119064.1 2112050..2113396(-) (comFA) [Bacillus pseudomycoides strain 219298]
MLVGRQMLREELPFSKDELDRLERQGDISLERGVIKKSSHYVCQRCGNAEPRLFASFLCKRCNQMCTYCRKCITMGRVGE
CTVLVRDIRDVVWESLPNPLRWEGHLSAGQERAASGVTEAVHQKESFFIWAVCGAGKTEMLFYGIDEALQKGERVCIATP
RTDVVLELAPRLQTVFPDVPIAALYGGSLDREKEARLIVSTTHQLLRYYRAFDVMIVDEIDAFPYAMDKMLHHAVEQASK
ERAAQIYLTATPEETWKRKLWGGKQKGVIIPGRYHRQPLPVPRFRWCGNWKKALKRKEIPHVVFEWLKYYLLKQSPIFLF
VPHVRYIDEVSVLLKKLDDRIEGVHAEDPKRKEKVASFRKGNIPLLVTTTILERGVTVENLQVAVLGAEEVIFSESALVQ
IAGRAGRSHRRPDGDILYFHYGKTEAMIRAKKHIQFMNKKAKQEGLIH

Nucleotide

• Length: 1347 bp

>NTDB_id=121763 MA06_RS13170 WP_040119064.1 2112050..2113396(-) (comFA) [Bacillus pseudomycoides strain 219298]
ATGCTAGTAGGAAGACAAATGCTACGAGAAGAACTTCCATTTTCGAAAGATGAACTAGATCGTTTGGAAAGACAAGGAGA
TATTTCTTTGGAAAGAGGTGTAATAAAGAAATCGTCACATTATGTATGTCAGCGCTGCGGAAATGCAGAACCGCGGTTAT
TTGCATCATTTCTATGTAAACGATGCAACCAAATGTGCACGTATTGCCGAAAGTGCATCACGATGGGGCGAGTGGGAGAA
TGTACAGTGCTCGTTCGAGATATACGAGATGTAGTATGGGAAAGTTTGCCGAATCCTTTACGGTGGGAGGGCCATTTATC
AGCTGGGCAGGAGAGAGCAGCTAGCGGAGTAACAGAAGCAGTACACCAAAAAGAATCTTTTTTTATATGGGCAGTATGTG
GAGCTGGTAAGACAGAGATGCTTTTTTATGGTATAGATGAAGCTTTACAAAAAGGCGAGCGGGTTTGTATTGCAACGCCG
CGGACTGATGTGGTGTTAGAGCTCGCACCCCGTTTGCAAACTGTTTTTCCAGATGTACCGATTGCTGCGTTATATGGTGG
TAGTTTGGACCGTGAAAAGGAAGCAAGGCTCATCGTTTCTACAACGCACCAGTTGCTTCGTTATTATAGAGCATTTGATG
TTATGATTGTGGATGAAATTGATGCTTTTCCATATGCGATGGACAAGATGCTTCATCATGCAGTAGAGCAAGCGAGTAAA
GAGCGAGCAGCGCAAATTTATTTAACTGCAACTCCGGAAGAAACATGGAAACGTAAGCTATGGGGTGGTAAACAAAAAGG
TGTAATCATTCCGGGGCGTTATCATCGTCAGCCTTTGCCAGTCCCAAGGTTCCGGTGGTGCGGTAATTGGAAAAAGGCGC
TAAAACGAAAAGAAATCCCGCATGTTGTTTTTGAATGGCTAAAGTATTATCTCCTTAAACAATCTCCTATTTTTCTATTT
GTTCCTCACGTACGTTATATTGATGAAGTAAGTGTATTATTAAAAAAATTAGATGATCGCATTGAAGGTGTTCATGCTGA
GGATCCAAAGCGAAAAGAAAAGGTAGCTTCGTTCCGCAAAGGAAATATCCCATTATTAGTAACGACGACGATTTTGGAAC
GCGGCGTGACGGTAGAGAATTTACAAGTAGCGGTGTTAGGGGCGGAAGAGGTCATTTTTTCGGAAAGTGCACTTGTACAA
ATTGCTGGCAGGGCCGGCAGAAGTCATCGCAGGCCAGATGGTGATATTCTTTATTTTCATTATGGAAAAACAGAAGCAAT
GATACGCGCAAAAAAACATATCCAATTTATGAATAAAAAGGCAAAGCAAGAAGGGTTGATACATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (106-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.905	98.661	0.502
comFA	Latilactobacillus sakei subsp. sakei 23K	39.238	99.554	0.391
comFA/cflA	Streptococcus mitis SK321	38.249	96.875	0.371