Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MA06_RS08380 Genome accession   NZ_CP007626
Coordinates   1207986..1209725 (-) Length   579 a.a.
NCBI ID   WP_018766169.1    Uniprot ID   A0A2A8H6C8
Organism   Bacillus pseudomycoides strain 219298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1202986..1214725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS29060 (DJ92_1269) - 1203041..1203187 (+) 147 WP_003200201.1 YycC family protein -
  MA06_RS08355 (DJ92_1270) - 1203556..1204653 (+) 1098 WP_018780788.1 RapH N-terminal domain-containing protein -
  MA06_RS08360 (DJ92_1271) - 1204653..1204946 (+) 294 WP_018780787.1 hypothetical protein -
  MA06_RS08365 (DJ92_1272) - 1205126..1205320 (-) 195 WP_018780786.1 hypothetical protein -
  MA06_RS08370 (DJ92_1273) spo0A 1205485..1206279 (-) 795 WP_003208448.1 sporulation transcription factor Spo0A Regulator
  MA06_RS08375 (DJ92_1274) spoIVB 1206566..1207867 (-) 1302 WP_003208450.1 SpoIVB peptidase -
  MA06_RS08380 (DJ92_1275) recN 1207986..1209725 (-) 1740 WP_018766169.1 DNA repair protein RecN Machinery gene
  MA06_RS08385 (DJ92_1276) argR 1209998..1210447 (-) 450 WP_001032579.1 arginine repressor ArgR -
  MA06_RS08390 (DJ92_1277) - 1210590..1211429 (-) 840 WP_006095949.1 TlyA family RNA methyltransferase -
  MA06_RS08395 (DJ92_1278) dxs 1211433..1213325 (-) 1893 WP_006095948.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MA06_RS31460 - 1213425..1213649 (-) 225 WP_097969008.1 hypothetical protein -
  MA06_RS08405 (DJ92_1279) - 1213670..1214563 (-) 894 WP_006095946.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65851.79 Da        Isoelectric Point: 4.9722

>NTDB_id=121751 MA06_RS08380 WP_018766169.1 1207986..1209725(-) (recN) [Bacillus pseudomycoides strain 219298]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYIEDDKHPCITK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVNQL
EIYQGVYGEYEQLKKQLKSLTENEQQMAHRLDLIQFQHEEIRKADLKVDEENELTEERLKISNFEKIYKALGDAYRSLSE
DGSGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLRERLDIMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKKLKELESVILKEATILSNMRHQLADRLTNAIHQELKELYMEKTKFEVRIK
KREGSHDDPFLEGTPVKLTADGYDHVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTEDKVTEIARMISGVEITDLTTEH
AKELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=121751 MA06_RS08380 WP_018766169.1 1207986..1209725(-) (recN) [Bacillus pseudomycoides strain 219298]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCAATCAGCTTACTTGTTGGTGGCCGCGGTTCAGCAGAAT
TTGTTAGATATGGAACAGAAAAAGCTGAAATTGAAGGTTTATTTTATATAGAGGATGATAAACATCCATGTATTACGAAA
GCTGAAGAGCTGGACATTGAAATTGAAGATGGGATGATCATTTTAAAACGTGACATCGCTGCGAATGGAAAAAGTGTATG
TCGTGTAAATGGTAAACTTGTTACATTGAGTATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAACATG
AAACGCAAGATTTGATGAATGAGGAACGCCATTTGTTTATGCTCGATCATTTTGATGGGGATCGTATCGTGAACCAATTA
GAAATATATCAGGGCGTATACGGTGAGTATGAGCAGTTAAAAAAACAACTGAAATCCTTAACAGAGAATGAACAGCAGAT
GGCACATCGCTTAGATTTAATTCAATTCCAGCACGAAGAAATTCGTAAAGCGGATTTGAAAGTCGATGAAGAAAATGAAT
TGACGGAAGAGAGATTAAAAATCTCTAATTTCGAAAAGATTTATAAAGCGCTTGGTGATGCATACCGTTCGTTAAGCGAA
GATGGTAGTGGACTTGATCATGTGCGAAATGCGATGGGACAAATGGAGAGTATTACACACCTAGATGAGGCGTATCAAGA
GAACCATGATTCGATTGCAAATAGCTACTACTTATTAGAAGAGGTTGCCTATCAGCTCCGTGAAAGATTAGATATAATGG
AATATGACCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATAGAGCAAGAAATTTTTACAATCGAAAATAAAGATGTACATATTGAAAC
GACGAAAAAGAAATTAAAAGAATTAGAAAGTGTAATTTTGAAGGAAGCAACAATATTGAGCAATATGCGTCATCAACTTG
CAGATCGTCTTACGAACGCAATCCACCAAGAATTAAAAGAATTGTATATGGAAAAAACGAAATTTGAAGTGAGGATTAAG
AAAAGAGAAGGAAGCCATGATGATCCATTTCTAGAAGGGACACCAGTGAAACTTACGGCAGATGGATACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAACCATTAAAACAACTTTCAAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTA
TTTTAGCTCTGAAAAGTATCTTTTCTAAGCATCAAGGTGTTGCATCGGTCATTTTTGATGAAGTAGATACGGGAGTGAGT
GGCCGAGTGGCACAAGCGATTGCGGAAAAAATTTATCGTGTATCTGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCATCAATGGCGGATTCACATTTATTTATCCGTAAACAAGTTGCGAATGATCGGACGATTACATCAGTTACTG
TATTAAGTACAGAGGATAAGGTAACGGAGATTGCTCGAATGATTTCTGGCGTGGAAATTACCGATTTAACGACGGAACAT
GCGAAAGAGTTACTTACGCAAGCACATCGTTTTAAACAGACAGCAGAGGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A8H6C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.099

99.655

0.589

Multiple sequence alignment