Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DW66_RS09200 Genome accession   NZ_CP007620
Coordinates   1965493..1967706 (+) Length   737 a.a.
NCBI ID   WP_038410377.1    Uniprot ID   -
Organism   Pseudomonas putida strain DLL-E4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1960493..1972706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DW66_RS09180 (DW66_1813) - 1962358..1962981 (+) 624 WP_024086519.1 glutathione S-transferase -
  DW66_RS09185 (DW66_1814) - 1963126..1964058 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  DW66_RS09190 (DW66_1815) - 1964055..1964834 (+) 780 WP_003260104.1 ABC transporter permease -
  DW66_RS09195 - 1964844..1965350 (-) 507 Protein_1827 DUF2062 domain-containing protein -
  DW66_RS09200 (DW66_1816) comA 1965493..1967706 (+) 2214 WP_038410377.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DW66_RS09205 (DW66_1817) exbB 1967925..1968560 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DW66_RS09210 (DW66_1818) - 1968557..1968991 (+) 435 WP_013971564.1 ExbD/TolR family protein -
  DW66_RS09215 (DW66_1819) lpxK 1968991..1969992 (+) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  DW66_RS09220 (DW66_1820) - 1970037..1970222 (+) 186 WP_011532874.1 Trm112 family protein -
  DW66_RS09225 (DW66_1821) kdsB 1970219..1970983 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DW66_RS09230 (DW66_1822) - 1970983..1971447 (+) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  DW66_RS09235 (DW66_1823) murB 1971444..1972463 (+) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79458.30 Da        Isoelectric Point: 10.6562

>NTDB_id=121730 DW66_RS09200 WP_038410377.1 1965493..1967706(+) (comA) [Pseudomonas putida strain DLL-E4]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGNWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPPAVPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IIRGLPVKRVIGGEVLDEMRLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPREVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=121730 DW66_RS09200 WP_038410377.1 1965493..1967706(+) (comA) [Pseudomonas putida strain DLL-E4]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCTGTCGGATGGCT
AGTGCTGCTGGCTGTAGCCGGTGGCCTCGGCCTGTTCACGCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCACCGGGCTGGATGGTCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTGGA
CGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGCGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
TGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAA
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGTTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCCCAGCAGCCGGCGTGGCTGCCACCAGCCGTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGTGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCGCAC
TCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGTGCA
ATCATACGTGGCCTGCCGGTCAAGCGGGTAATCGGCGGCGAAGTGCTGGATGAAATGCGACTGCAACCTTGTGCCAGTGG
CGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGTG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGAGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.558

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372

Multiple sequence alignment