Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EG64_RS06920 | Genome accession | NZ_CP007606 |
| Coordinates | 1419755..1420330 (-) | Length | 191 a.a. |
| NCBI ID | WP_038418179.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM013B | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1414755..1425330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG64_RS06910 (EG64_07235) | - | 1416430..1417686 (-) | 1257 | WP_038418176.1 | restriction endonuclease subunit S | - |
| EG64_RS06915 (EG64_07240) | - | 1417683..1419722 (-) | 2040 | WP_038418177.1 | class I SAM-dependent DNA methyltransferase | - |
| EG64_RS06920 (EG64_07245) | comFC | 1419755..1420330 (-) | 576 | WP_038418179.1 | ComF family protein | Machinery gene |
| EG64_RS06925 (EG64_07250) | tmk | 1420318..1420893 (-) | 576 | WP_038418180.1 | dTMP kinase | - |
| EG64_RS06930 (EG64_07255) | coaD | 1420895..1421368 (-) | 474 | WP_038418181.1 | pantetheine-phosphate adenylyltransferase | - |
| EG64_RS06935 (EG64_07260) | - | 1421368..1421931 (-) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| EG64_RS06940 (EG64_07265) | flgA | 1421941..1422597 (-) | 657 | WP_038418182.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EG64_RS06945 (EG64_07270) | uvrD | 1422594..1424639 (-) | 2046 | WP_038418183.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21363.87 Da Isoelectric Point: 8.6758
>NTDB_id=121619 EG64_RS06920 WP_038418179.1 1419755..1420330(-) (comFC) [Helicobacter pylori strain BM013B]
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANHPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANHPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=121619 EG64_RS06920 WP_038418179.1 1419755..1420330(-) (comFC) [Helicobacter pylori strain BM013B]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATTCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATTCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |