Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EG66_RS07465 | Genome accession | NZ_CP007605 |
| Coordinates | 1519891..1520466 (-) | Length | 191 a.a. |
| NCBI ID | WP_038420248.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM012B | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1514891..1525466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG66_RS07455 (EG66_07830) | - | 1517208..1517822 (-) | 615 | WP_023592615.1 | restriction endonuclease subunit S | - |
| EG66_RS07460 (EG66_07835) | - | 1517819..1519858 (-) | 2040 | WP_023592616.1 | class I SAM-dependent DNA methyltransferase | - |
| EG66_RS07465 (EG66_07840) | comFC | 1519891..1520466 (-) | 576 | WP_038420248.1 | ComF family protein | Machinery gene |
| EG66_RS07470 (EG66_07845) | tmk | 1520454..1521029 (-) | 576 | WP_023592618.1 | dTMP kinase | - |
| EG66_RS07475 (EG66_07850) | coaD | 1521031..1521504 (-) | 474 | WP_023592619.1 | pantetheine-phosphate adenylyltransferase | - |
| EG66_RS07480 (EG66_07855) | - | 1521504..1522067 (-) | 564 | WP_023592620.1 | UbiX family flavin prenyltransferase | - |
| EG66_RS07485 (EG66_07860) | flgA | 1522077..1522733 (-) | 657 | WP_023592621.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EG66_RS07490 (EG66_07865) | uvrD | 1522730..1524775 (-) | 2046 | WP_038420449.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21351.90 Da Isoelectric Point: 8.8864
>NTDB_id=121599 EG66_RS07465 WP_038420248.1 1519891..1520466(-) (comFC) [Helicobacter pylori strain BM012B]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSTDE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEVEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSTDE
Nucleotide
Download Length: 576 bp
>NTDB_id=121599 EG66_RS07465 WP_038420248.1 1519891..1520466(-) (comFC) [Helicobacter pylori strain BM012B]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAACATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATCTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATTGCGCTTTG
CAGCACGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAGTAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAACATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATCTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATTGCGCTTTG
CAGCACGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |