Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EG63_RS06915 | Genome accession | NZ_CP007604 |
| Coordinates | 1419776..1420351 (-) | Length | 191 a.a. |
| NCBI ID | WP_038418179.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM013A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1414776..1425351
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG63_RS06905 (EG63_07230) | - | 1416451..1417707 (-) | 1257 | WP_038418176.1 | restriction endonuclease subunit S | - |
| EG63_RS06910 (EG63_07235) | - | 1417704..1419743 (-) | 2040 | WP_038418177.1 | class I SAM-dependent DNA methyltransferase | - |
| EG63_RS06915 (EG63_07240) | comFC | 1419776..1420351 (-) | 576 | WP_038418179.1 | ComF family protein | Machinery gene |
| EG63_RS06920 (EG63_07245) | tmk | 1420339..1420914 (-) | 576 | WP_038418180.1 | dTMP kinase | - |
| EG63_RS06925 (EG63_07250) | coaD | 1420916..1421389 (-) | 474 | WP_038418181.1 | pantetheine-phosphate adenylyltransferase | - |
| EG63_RS06930 (EG63_07255) | - | 1421389..1421952 (-) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| EG63_RS06935 (EG63_07260) | flgA | 1421962..1422618 (-) | 657 | WP_038418182.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EG63_RS06940 (EG63_07265) | uvrD | 1422615..1424660 (-) | 2046 | WP_038418984.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21363.87 Da Isoelectric Point: 8.6758
>NTDB_id=121576 EG63_RS06915 WP_038418179.1 1419776..1420351(-) (comFC) [Helicobacter pylori strain BM013A]
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANHPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANHPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=121576 EG63_RS06915 WP_038418179.1 1419776..1420351(-) (comFC) [Helicobacter pylori strain BM013A]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATTCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATTCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACCACCCACGGGATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGTTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCCCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.751 |
100 |
0.361 |